Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 RNU6-612P-201ENST00000516909 102 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 RN7SKP295-201ENST00000517264 153 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL391261.3-201ENST00000557194 520 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 BNIP3P16-201ENST00000589779 534 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL355802.3-201ENST00000607571 545 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC012531.5-201ENST00000611375 151 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 MIR8076-201ENST00000611401 83 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC068831.7-201ENST00000616954 363 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL591424.2-201ENST00000617023 128 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC006111.3-201ENST00000622137 383 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL021368.2-201ENST00000606125 5352 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC110491.1-201ENST00000562191 2010 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 RNU6-428P-201ENST00000362942 107 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.216-201ENST00000364205 93 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 RNU1-64P-201ENST00000365443 163 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 MIR518D-201ENST00000385014 87 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 RNU6-308P-201ENST00000390957 107 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 RNU6-1245P-201ENST00000411130 106 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC096664.2-201ENST00000411843 406 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC011742.1-201ENST00000431448 434 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AL591043.1-201ENST00000432461 424 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 snoU13.28-201ENST00000459235 104 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC069499.1-201ENST00000489433 509 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 RPL31P61-201ENST00000496160 376 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 SNORA43.2-201ENST00000516652 128 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 SNORD116.3-201ENST00000517176 78 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC106785.1-201ENST00000565935 262 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 RN7SL703P-201ENST00000578485 302 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 MTND4LP5-201ENST00000605152 292 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AL354798.1-201ENST00000622505 329 ntBASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
TRIM39Q9HCM9 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL136164.4-201ENST00000625013 2135 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.31-201ENST00000362574 102 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RNU6-1160P-201ENST00000384546 104 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RPS29P13-201ENST00000402041 169 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 SNORA3.3-201ENST00000408712 125 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RHEBP3-201ENST00000411920 351 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RAB9AP3-201ENST00000412737 573 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 EIF4EP2-201ENST00000422816 654 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 MTND2P23-201ENST00000422990 651 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC018865.2-201ENST00000423631 129 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RPS29P7-201ENST00000439662 171 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC099799.1-201ENST00000439809 192 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RAB9AP1-201ENST00000449393 573 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC012308.1-201ENST00000451232 178 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 FTH1P2-201ENST00000466086 412 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RPL23AP14-201ENST00000468281 468 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 CYCSP30-201ENST00000546447 172 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AL451007.1-201ENST00000595491 289 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 AC005046.1-201ENST00000608515 625 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 OTUD4P1-201ENST00000237841 3067 ntBASIC3.86□□□□□ -1.79
TRIM39Q9HCM9 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 MTND5P30-201ENST00000452896 1731 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.5-201ENST00000362334 102 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 RNU6-227P-201ENST00000362865 103 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.126-201ENST00000363382 111 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 RNU6-336P-201ENST00000364891 107 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 RNU6-1280P-201ENST00000365211 107 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 BX276092.3-201ENST00000424182 230 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms