Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU6-639P-201ENST00000384074 107 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 HSPE1P26-201ENST00000405341 275 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 U3.39-201ENST00000408569 239 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC006989.1-201ENST00000427212 131 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 TOMM20P4-201ENST00000427861 435 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AL158071.1-201ENST00000430315 461 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 SNRPGP5-201ENST00000456003 220 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-579P-201ENST00000516879 102 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC026403.1-201ENST00000518938 295 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-988P-201ENST00000519081 107 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 MIR1254-2-201ENST00000579553 63 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC009314.1-201ENST00000603871 304 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AP000787.2-201ENST00000604432 568 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AL713922.2-201ENST00000619384 716 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC027309.3-201ENST00000623419 351 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC244205.2-202ENST00000635781 342 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 U2.21-201ENST00000637295 81 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 CEP170P1-201ENST00000502249 4587 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 MAPK10-372ENST00000641954 3413 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AC090740.1-201ENST00000623193 2262 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.496-201ENST00000384444 101 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-790P-201ENST00000384479 105 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 MIR34A-201ENST00000385130 110 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 MCFD2P1-201ENST00000417812 300 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 AC025518.1-201ENST00000479856 347 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 RPS4XP13-201ENST00000483219 789 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 AC022493.2-201ENST00000506122 481 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.687-201ENST00000516558 91 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-699P-201ENST00000517081 110 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 DNAJC8P1-201ENST00000554535 372 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 CYCSP39-201ENST00000565821 309 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 MIR4738-201ENST00000579134 87 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 BNIP3P16-201ENST00000589779 534 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 MIR3976-201ENST00000606807 139 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 U6.99-201ENST00000637524 83 ntBASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
PCIF1Q9H4Z3 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.145-201ENST00000363527 102 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.252-201ENST00000364556 101 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-1317P-201ENST00000364582 104 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 Z98749.2-208ENST00000381646 500 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 MIR200C-201ENST00000384980 68 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-55P-201ENST00000411092 107 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC113618.1-201ENST00000416747 285 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 HMGB1P12-201ENST00000438594 598 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 SNORD105B-201ENST00000458770 79 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 U3.44-201ENST00000458938 192 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 snoU109.2-201ENST00000459316 135 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.661-201ENST00000516003 99 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 RNU2-27P-201ENST00000516185 142 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 RNA5SP309-201ENST00000516670 106 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-703P-201ENST00000516946 107 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AP006245.1-201ENST00000522549 120 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC026333.2-201ENST00000542164 106 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC103996.1-201ENST00000555468 102 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 CPDP1-201ENST00000579660 283 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC025946.2-201ENST00000603398 234 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC007485.1-201ENST00000616755 206 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AP003355.3-201ENST00000623465 114 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 AC068647.1-201ENST00000489539 2265 ntBASIC3.84□□□□□ -1.79
PCIF1Q9H4Z3 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.84□□□□□ -1.8
PCIF1Q9H4Z3 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC022336.2-201ENST00000568966 2538 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-778P-201ENST00000363269 103 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AL513475.1-201ENST00000406602 315 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-174P-201ENST00000410406 106 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC096664.2-201ENST00000411843 406 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 RPS29P4-201ENST00000414733 161 ntBASIC3.83□□□□□ -1.8
PCIF1Q9H4Z3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms