Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL353705.1-201ENST00000433468 480 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 SETP5-201ENST00000437270 562 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC009969.1-201ENST00000438726 172 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 MTCO3P45-201ENST00000443036 613 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL121871.1-201ENST00000443413 436 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 MTND1P17-201ENST00000448961 204 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 HMGB1P30-201ENST00000492455 606 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RNU6-256P-201ENST00000516747 97 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RNU6-1092P-201ENST00000516955 87 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RN7SKP295-201ENST00000517264 153 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC107934.2-201ENST00000518653 310 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RNU6-988P-201ENST00000519081 107 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL137161.1-201ENST00000532231 390 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AP000763.2-201ENST00000540641 163 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC022080.3-201ENST00000544433 482 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC126177.3-201ENST00000551839 688 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 OR11H5P-201ENST00000554039 926 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC110588.1-201ENST00000559699 137 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC107294.3-201ENST00000609211 526 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 uc_338.1-201ENST00000612113 180 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 ATP5A1P2-202ENST00000616464 443 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 uc_338.11-201ENST00000619132 160 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 MIR6852-201ENST00000621699 66 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC025034.2-201ENST00000623264 286 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AC048347.1-201ENST00000624621 427 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 MIR4275-201ENST00000636486 87 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL137003.2-201ENST00000606924 2538 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RNU6-1115P-201ENST00000362490 106 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 SNORD113-7-201ENST00000363762 77 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RNU6-335P-201ENST00000364563 113 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RNU6-310P-201ENST00000384655 107 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RNU6-985P-201ENST00000410182 104 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AL356968.1-201ENST00000416622 474 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC114482.1-201ENST00000418010 247 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 ARL5AP1-201ENST00000418991 388 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RPL23AP82-202ENST00000427528 469 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC090774.1-201ENST00000435925 246 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.653-201ENST00000459091 95 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC008481.1-201ENST00000463278 396 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 CENPBD1P1-201ENST00000464061 469 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RPS27P27-201ENST00000498779 255 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 MTCO2P24-201ENST00000515611 426 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 RNU6-123P-201ENST00000516163 102 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC245166.1-201ENST00000521012 253 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 MIR2682-201ENST00000580305 110 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 AC098657.3-201ENST00000620434 263 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 MTND5P10-201ENST00000603719 1809 ntBASIC3.32□□□□□ -1.88
EBF3Q9H4W6 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
EBF3Q9H4W6 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC017071.1-201ENST00000564407 2204 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 MTND5P30-201ENST00000452896 1731 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 API5P2-201ENST00000397055 1498 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 RNU6-179P-201ENST00000363350 107 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.212-201ENST00000364177 102 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 SNORA7.2-201ENST00000364446 145 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 RNU2-43P-201ENST00000410306 190 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 POLHP1-201ENST00000411806 470 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 HMGB3P2-201ENST00000411913 584 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 MCFD2P1-201ENST00000417812 300 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC018865.2-201ENST00000423631 129 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 RPL7P46-201ENST00000425129 740 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms