Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC008993.2-201ENST00000631744 806 ntBASIC2.23□□□□□ -2.05
VPS35Q96QK1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.23□□□□□ -2.05
VPS35Q96QK1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS35Q96QK1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS35Q96QK1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS35Q96QK1 AC103710.2-202ENST00000641454 2853 ntBASIC2.23□□□□□ -2.05
VPS35Q96QK1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS35Q96QK1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS35Q96QK1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS35Q96QK1 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU6-641P-201ENST00000384006 107 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU4-52P-201ENST00000384209 138 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU5A-2P-201ENST00000384337 116 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RPS3AP36-201ENST00000398190 775 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AL133475.1-201ENST00000404414 305 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 CIR1P3-201ENST00000405137 479 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU2-39P-201ENST00000410604 198 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU2-8P-201ENST00000410727 190 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU4-72P-201ENST00000410754 173 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC114491.1-201ENST00000416095 246 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC016831.2-201ENST00000417179 352 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AL353621.1-201ENST00000418219 243 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 AL139109.1-201ENST00000455491 297 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 RAP1BP2-201ENST00000478270 544 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC090255.1-201ENST00000495779 349 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC008413.1-201ENST00000511864 177 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC008549.1-201ENST00000512900 643 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNU6-123P-201ENST00000516163 102 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 RNA5SP200-201ENST00000516360 103 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC022616.3-201ENST00000523940 148 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 CBX3P7-201ENST00000532876 502 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 ADI1P3-201ENST00000549509 470 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AL133241.1-201ENST00000556832 487 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC026464.5-201ENST00000562497 722 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.22□□□□□ -2.05
VPS35Q96QK1 SNORD14A-201ENST00000606526 91 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 AC091304.9-201ENST00000612091 226 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 MTND5P6-201ENST00000422338 1798 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 ZNF720P1-201ENST00000562403 1939 ntBASIC2.22□□□□□ -2.05
VPS35Q96QK1 MIRLET7G-201ENST00000362280 84 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 SNORD3E-201ENST00000362899 217 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 MIR221-201ENST00000385135 110 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 CISD1P1-201ENST00000393907 327 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 FTH1P15-201ENST00000406984 280 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 Y_RNA.623-201ENST00000411128 95 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AL365203.2-201ENST00000423444 196 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AL160275.3-201ENST00000423876 471 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 RPL7P12-201ENST00000446719 750 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 AL133217.1-201ENST00000450980 425 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 ART2BP-201ENST00000453501 499 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC112771.1-201ENST00000463581 102 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC022493.1-201ENST00000492984 337 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC008526.1-201ENST00000509149 338 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC117522.1-201ENST00000509821 380 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC079598.5-201ENST00000547460 117 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC078814.3-201ENST00000553036 491 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC025678.1-201ENST00000567861 338 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC087045.1-201ENST00000605856 382 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AL139286.2-201ENST00000606838 396 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 AC010378.1-201ENST00000619270 362 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 HSPA8P4-201ENST00000511877 1920 ntBASIC2.21□□□□□ -2.06
VPS35Q96QK1 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS35Q96QK1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 ZNF658B-202ENST00000615961 3375 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS35Q96QK1 MIR412-201ENST00000362142 91 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 Y_RNA.22-201ENST00000362492 102 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS35Q96QK1 OR5H15-201ENST00000383696 930 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 SNORA24.1-201ENST00000384401 135 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 SNORA48.3-201ENST00000391081 134 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 SNORA3.2-201ENST00000408221 125 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 RNA5SP425-201ENST00000410336 112 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 HMGB3P2-201ENST00000411913 584 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 AL365338.1-201ENST00000422282 858 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 AL353706.1-201ENST00000436728 494 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 MTND6P13-201ENST00000443510 523 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 IFNA11P-201ENST00000446352 526 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS35Q96QK1 SNRPFP4-201ENST00000456366 242 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms