Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.5□□□□□ -2.01
VMP1Q96GC9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VMP1Q96GC9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VMP1Q96GC9 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 Y_RNA.22-201ENST00000362492 102 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 RNU6-487P-201ENST00000365430 104 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 RNU6-61P-201ENST00000365528 109 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 SNORA80E-201ENST00000384744 137 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 MIR578-201ENST00000384828 96 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 ARL5AP4-201ENST00000430731 512 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 CALM1P1-201ENST00000442082 433 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 GPM6BP3-201ENST00000442797 145 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 MTND6P13-201ENST00000443510 523 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AP000936.2-201ENST00000447151 681 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC006026.2-201ENST00000457376 180 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC004263.1-201ENST00000479327 332 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 SNORA31.25-201ENST00000517242 134 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC105137.2-201ENST00000569073 466 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 MTCYBP33-201ENST00000575007 1130 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 MIR548AB-201ENST00000584917 84 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 MIR4760-201ENST00000585040 80 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC006023.1-201ENST00000603944 259 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL670379.4-201ENST00000605279 254 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 NDUFA8P1-201ENST00000605525 367 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AL121917.1-203ENST00000605534 577 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC025034.2-201ENST00000623264 286 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 SCARNA4-202ENST00000625402 129 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AC019226.2-201ENST00000625973 424 ntBASIC2.49□□□□□ -2.01
VMP1Q96GC9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
VMP1Q96GC9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VMP1Q96GC9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 RNU6-179P-201ENST00000363350 107 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 MIR196B-201ENST00000384852 84 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AL139039.1-201ENST00000401900 692 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 RNU2-52P-201ENST00000410680 190 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AL031779.1-201ENST00000415663 330 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC008267.5-201ENST00000424928 265 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AL365400.1-201ENST00000431854 640 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 AL136380.1-201ENST00000447970 162 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 AL109933.2-201ENST00000452651 260 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC126389.1-201ENST00000477436 290 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC109486.1-201ENST00000486833 374 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 SRIP1-201ENST00000489235 288 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 RNU2-53P-201ENST00000516257 147 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 Vault.3-201ENST00000516676 95 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 RNU6-759P-201ENST00000516740 103 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 RPL7P20-201ENST00000520308 745 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 MIR5692A1-201ENST00000580523 69 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 MIR3682-201ENST00000581338 84 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 AP001486.3-201ENST00000615334 372 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 uc_338.15-201ENST00000615470 191 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.48□□□□□ -2.01
VMP1Q96GC9 AC092608.2-201ENST00000624427 218 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.48□□□□□ -2.01
VMP1Q96GC9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VMP1Q96GC9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
VMP1Q96GC9 RNU6-169P-201ENST00000365336 107 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 SNORA25B-201ENST00000365507 128 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 RNU6-1032P-201ENST00000384100 107 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 MIR186-201ENST00000384988 86 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 RNU6-387P-201ENST00000411331 105 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
VMP1Q96GC9 TOMM20P4-201ENST00000427861 435 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.47□□□□□ -2.01
VMP1Q96GC9 AC104850.1-201ENST00000435940 476 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.47□□□□□ -2.01
VMP1Q96GC9 RAP1BP2-201ENST00000478270 544 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.47□□□□□ -2.01
VMP1Q96GC9 AC116562.3-201ENST00000506136 177 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 SNORA4.4-201ENST00000515921 135 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.47□□□□□ -2.01
VMP1Q96GC9 AC068587.5-201ENST00000528506 175 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 RANP3-201ENST00000530970 276 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
VMP1Q96GC9 MIR3162-201ENST00000581818 82 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.47□□□□□ -2.01
VMP1Q96GC9 MIR4635-201ENST00000583759 79 ntBASIC2.47□□□□□ -2.01
VMP1Q96GC9 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms