Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RMST_4.1-201ENST00000616886 107 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 uc_338.34-201ENST00000617467 174 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 U6.42-201ENST00000618440 107 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL160394.1-201ENST00000624765 724 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC073476.4-201ENST00000628409 72 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC110491.1-201ENST00000562191 2010 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC103988.1-201ENST00000566382 2177 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3□□□□□ -1.93
COL28A1Q2UY09 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
COL28A1Q2UY09 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
COL28A1Q2UY09 RNU6-799P-201ENST00000363567 107 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.238-201ENST00000364441 102 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.256-201ENST00000364594 104 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RNU6-534P-201ENST00000364877 106 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.453-201ENST00000384223 109 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RNU6-166P-201ENST00000384371 107 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RNU6-434P-201ENST00000384376 107 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RNU6-45P-201ENST00000384471 107 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 MIR514A2-201ENST00000385131 88 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 MIR514A3-201ENST00000385132 88 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL28A1Q2UY09 AL606923.1-201ENST00000406616 190 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RNA5SP247-201ENST00000411181 105 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 BMS1P22-201ENST00000414726 313 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RPL21P90-201ENST00000415692 466 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 HSPE1P1-201ENST00000421494 318 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3□□□□□ -1.93
COL28A1Q2UY09 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3□□□□□ -1.93
COL28A1Q2UY09 AC105272.1-201ENST00000438604 198 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AL135938.1-201ENST00000443141 297 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AL078601.1-201ENST00000444542 271 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RPS15AP27-201ENST00000449183 343 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AL109933.2-201ENST00000452651 260 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 SCARNA18-201ENST00000459004 134 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 RPS29P25-201ENST00000481709 171 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 HMGB1P30-201ENST00000492455 606 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3□□□□□ -1.93
COL28A1Q2UY09 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL28A1Q2UY09 MTND4P7-201ENST00000523876 130 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3□□□□□ -1.93
COL28A1Q2UY09 SUB1P1-201ENST00000524415 382 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3□□□□□ -1.93
COL28A1Q2UY09 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3□□□□□ -1.93
COL28A1Q2UY09 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3□□□□□ -1.93
COL28A1Q2UY09 LRRC37A5P-203ENST00000580181 585 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3□□□□□ -1.93
COL28A1Q2UY09 AL645944.1-201ENST00000603857 493 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AL035413.2-201ENST00000604801 525 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AC104458.1-201ENST00000608243 463 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 AC007014.2-201ENST00000615581 479 ntBASIC3□□□□□ -1.93
COL28A1Q2UY09 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL28A1Q2UY09 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL28A1Q2UY09 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 ASNSP3-201ENST00000451989 1306 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.38-201ENST00000362617 102 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU6-82P-201ENST00000363970 107 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU6-393P-201ENST00000384475 107 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU1-101P-201ENST00000391171 127 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RN7SKP58-201ENST00000411010 305 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNA5SP344-201ENST00000411081 104 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU6-607P-201ENST00000411283 108 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 ARL5AP1-201ENST00000418991 388 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC093151.1-201ENST00000427711 313 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RPL21P40-201ENST00000428586 483 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AL627311.1-201ENST00000431514 115 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AL139132.1-201ENST00000431587 344 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC091179.1-201ENST00000461606 579 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RPS29P26-201ENST00000477483 171 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC079140.5-201ENST00000507882 310 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU2-69P-201ENST00000516061 100 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU6-718P-201ENST00000516166 105 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU6-1178P-201ENST00000516674 107 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 RNU6-1183P-201ENST00000517054 60 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 MTND1P35-201ENST00000526739 508 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 DNAJC8P1-201ENST00000554535 372 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 CYCSP39-201ENST00000565821 309 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC234778.2-201ENST00000566241 354 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 MTCO3P24-201ENST00000572729 782 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 MIR4782-201ENST00000577987 79 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 HMGN2P15-201ENST00000585707 270 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC073539.2-201ENST00000597113 165 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AL157817.1-201ENST00000614264 790 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC022418.1-201ENST00000624118 445 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 MTND5P19-201ENST00000424872 1794 ntBASIC2.99□□□□□ -1.93
COL28A1Q2UY09 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
COL28A1Q2UY09 AC110774.1-201ENST00000623567 2018 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms