Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC023512.1-201ENST00000444513 499 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 TPTE2P6-202ENST00000445572 1007 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC074198.2-201ENST00000508153 258 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU6-782P-201ENST00000516852 104 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AC004852.3-201ENST00000614131 326 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC0.24□□□□□ -2.37
COL7A1Q02388 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
COL7A1Q02388 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
COL7A1Q02388 SNORA68.1-201ENST00000364537 132 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 SNORD82-201ENST00000365530 70 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
COL7A1Q02388 MIR214-201ENST00000385214 110 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RPS15AP40-201ENST00000419621 391 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.24□□□□□ -2.37
COL7A1Q02388 MTND2P19-201ENST00000449129 1012 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RPL23AP3-201ENST00000453844 468 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AC079140.2-201ENST00000506193 142 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU6-889P-201ENST00000517189 103 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 CIR1P1-201ENST00000524055 1133 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC012414.6-201ENST00000568241 401 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 ZNF92P3-201ENST00000596594 954 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC004775.1-201ENST00000607389 753 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL021879.1-201ENST00000611756 288 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL161423.1-201ENST00000613700 262 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 MTND5P31-201ENST00000419366 1374 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 SNORD115-41-201ENST00000363608 82 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.23□□□□□ -2.37
COL7A1Q02388 MIR30A-201ENST00000385092 71 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 MIR100-201ENST00000385259 80 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 RNU6-837P-201ENST00000391056 108 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 RNU2-7P-201ENST00000410794 178 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC097463.2-201ENST00000421074 142 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AL359385.1-201ENST00000456509 365 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC112206.3-201ENST00000514578 389 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 SNORA31.6-201ENST00000516241 130 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 RNU6-798P-201ENST00000516912 103 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.23□□□□□ -2.37
COL7A1Q02388 HAUS1P3-201ENST00000523909 662 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC004923.2-201ENST00000529649 369 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC090115.3-201ENST00000553218 849 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC105224.1-201ENST00000587055 421 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AL020997.3-201ENST00000602843 359 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC005021.1-201ENST00000608730 355 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
COL7A1Q02388 RNA5SP125-201ENST00000364843 120 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 FAM204CP-201ENST00000424489 642 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 TAAR7P-201ENST00000436141 242 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 MTND4P6-201ENST00000438297 472 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.23□□□□□ -2.37
COL7A1Q02388 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 RPS27AP8-201ENST00000452665 445 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 HNRNPDLP3-201ENST00000456745 380 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
COL7A1Q02388 AC111000.5-201ENST00000506559 1178 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
COL7A1Q02388 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 PSMC1P5-201ENST00000512850 177 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 SNORA31.8-201ENST00000516327 108 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 SNORA70.16-201ENST00000516390 95 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 RNA5SP165-201ENST00000517142 115 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 SCARNA11.3-201ENST00000517276 130 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 CENPUP1-201ENST00000526649 1202 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
COL7A1Q02388 OR8K4P-201ENST00000534608 872 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC093027.1-201ENST00000546698 429 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.23□□□□□ -2.37
COL7A1Q02388 MIR4422-201ENST00000581938 83 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.23□□□□□ -2.37
COL7A1Q02388 AL138963.2-201ENST00000605137 226 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AL450336.1-201ENST00000605180 586 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 AC117490.2-201ENST00000610042 594 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms