Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HDAC4P56524 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.16□□□□□ -1.9
HDAC4P56524 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
HDAC4P56524 MIR22-201ENST00000362190 85 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 Y_RNA.167-201ENST00000363735 109 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HDAC4P56524 SNORA75B-201ENST00000384053 137 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 RNU6-1127P-201ENST00000384580 107 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AL139039.1-201ENST00000401900 692 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 RNU2-68P-201ENST00000410878 191 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 RNA5SP492-201ENST00000411330 114 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.15□□□□□ -1.91
HDAC4P56524 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.15□□□□□ -1.91
HDAC4P56524 SRIP2-201ENST00000428470 166 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AL669831.1-202ENST00000428504 417 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 GTF2IP13-201ENST00000438487 386 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.15□□□□□ -1.91
HDAC4P56524 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 UQCRHP3-201ENST00000451503 251 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC117440.1-201ENST00000474107 571 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 RPL38P4-201ENST00000502376 214 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.15□□□□□ -1.91
HDAC4P56524 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.15□□□□□ -1.91
HDAC4P56524 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.15□□□□□ -1.91
HDAC4P56524 RAC1P5-201ENST00000512182 576 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.15□□□□□ -1.91
HDAC4P56524 RNA5SP165-201ENST00000517142 115 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.15□□□□□ -1.91
HDAC4P56524 AP003122.3-201ENST00000526316 255 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC084851.1-201ENST00000529105 249 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.15□□□□□ -1.91
HDAC4P56524 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
HDAC4P56524 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.15□□□□□ -1.91
HDAC4P56524 RPL23AP88-201ENST00000605759 454 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 AC069234.5-201ENST00000611056 416 ntBASIC3.15□□□□□ -1.91
HDAC4P56524 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.15□□□□□ -1.91
HDAC4P56524 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HDAC4P56524 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
HDAC4P56524 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.14□□□□□ -1.91
HDAC4P56524 RNU1-105P-201ENST00000363470 161 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 RNU6-371P-201ENST00000364283 108 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 RNU6-301P-201ENST00000384277 107 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 RNA5SP354-201ENST00000391247 136 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 RNU6-1148P-201ENST00000410992 104 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.14□□□□□ -1.91
HDAC4P56524 RPL39P40-201ENST00000445481 146 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.14□□□□□ -1.91
HDAC4P56524 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.14□□□□□ -1.91
HDAC4P56524 SNRPFP3-201ENST00000457792 225 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 RPL31P58-201ENST00000469001 379 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 PRDX4P1-201ENST00000507189 574 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.14□□□□□ -1.91
HDAC4P56524 AC098799.2-201ENST00000509466 868 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AC074344.1-201ENST00000512823 224 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.14□□□□□ -1.91
HDAC4P56524 RNU4-29P-201ENST00000515943 174 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.14□□□□□ -1.91
HDAC4P56524 AL137161.1-201ENST00000532231 390 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AL157871.3-201ENST00000557231 293 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.14□□□□□ -1.91
HDAC4P56524 RNU6-89P-201ENST00000606519 100 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.14□□□□□ -1.91
HDAC4P56524 AC110079.1-202ENST00000635213 138 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 OR4G1P-203ENST00000641984 1631 ntBASIC3.14□□□□□ -1.91
HDAC4P56524 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HDAC4P56524 AP003122.5-201ENST00000527668 3766 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 CASC19-280ENST00000642102 1351 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 NACAP2-201ENST00000318548 624 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RNU6-522P-201ENST00000364497 107 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RNU6-7-201ENST00000364784 107 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RNU6-8-201ENST00000365467 107 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RNA5SP274-201ENST00000410484 108 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 MTND4LP11-201ENST00000422184 280 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 SAR1AP4-201ENST00000429225 591 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.13□□□□□ -1.91
HDAC4P56524 CALM1P1-201ENST00000442082 433 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.13□□□□□ -1.91
HDAC4P56524 MTND4P18-201ENST00000447010 465 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RPS15AP27-201ENST00000449183 343 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RPL12P25-201ENST00000455592 494 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.13□□□□□ -1.91
HDAC4P56524 RNU7-23P-201ENST00000459465 62 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 HMGN2P26-201ENST00000463169 339 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RPL27AP5-201ENST00000469428 449 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 AF235103.2-201ENST00000525753 346 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 AL359198.2-201ENST00000611836 194 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 AC006504.8-201ENST00000621046 635 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HDAC4P56524 AC099654.7-201ENST00000635788 2127 ntBASIC3.13□□□□□ -1.91
HDAC4P56524 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDAC4P56524 AC008669.1-201ENST00000565823 2178 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.12□□□□□ -1.91
HDAC4P56524 Y_RNA.231-201ENST00000364358 102 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MIR578-201ENST00000384828 96 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MT-TL1-201ENST00000386347 75 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MIR767-201ENST00000390228 109 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HDAC4P56524 SNORD37.1-201ENST00000390968 65 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms