Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RNU6-1280P-201ENST00000365211 107 ntBASIC1.09□□□□□ -2.23
NUP98P52948 MIR518A2-201ENST00000384966 87 ntBASIC1.09□□□□□ -2.23
NUP98P52948 MIR29C-201ENST00000385231 88 ntBASIC1.09□□□□□ -2.23
NUP98P52948 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
NUP98P52948 RNU2-42P-201ENST00000410697 113 ntBASIC1.09□□□□□ -2.23
NUP98P52948 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.09□□□□□ -2.23
NUP98P52948 USP9YP26-201ENST00000421008 661 ntBASIC1.09□□□□□ -2.23
NUP98P52948 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.09□□□□□ -2.23
NUP98P52948 AL353706.1-201ENST00000436728 494 ntBASIC1.09□□□□□ -2.23
NUP98P52948 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.09□□□□□ -2.23
NUP98P52948 RNU6-1261P-201ENST00000517194 104 ntBASIC1.09□□□□□ -2.23
NUP98P52948 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.09□□□□□ -2.23
NUP98P52948 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.09□□□□□ -2.23
NUP98P52948 RPL21P5-201ENST00000554662 472 ntBASIC1.09□□□□□ -2.23
NUP98P52948 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC1.09□□□□□ -2.23
NUP98P52948 AC091057.3-201ENST00000602684 733 ntBASIC1.09□□□□□ -2.23
NUP98P52948 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.09□□□□□ -2.23
NUP98P52948 AC243773.3-201ENST00000613270 256 ntBASIC1.09□□□□□ -2.23
NUP98P52948 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.09□□□□□ -2.23
NUP98P52948 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.09□□□□□ -2.23
NUP98P52948 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
NUP98P52948 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
NUP98P52948 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.08□□□□□ -2.24
NUP98P52948 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
NUP98P52948 RNU1-78P-201ENST00000391248 165 ntBASIC1.08□□□□□ -2.24
NUP98P52948 ERHP2-201ENST00000402323 299 ntBASIC1.08□□□□□ -2.24
NUP98P52948 RNU6-955P-201ENST00000410497 104 ntBASIC1.08□□□□□ -2.24
NUP98P52948 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.08□□□□□ -2.24
NUP98P52948 SKA2P1-201ENST00000425592 390 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.08□□□□□ -2.24
NUP98P52948 USP9YP24-201ENST00000434374 697 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC021382.1-201ENST00000483523 359 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.08□□□□□ -2.24
NUP98P52948 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.08□□□□□ -2.24
NUP98P52948 SNORA4.4-201ENST00000515921 135 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.08□□□□□ -2.24
NUP98P52948 AC138915.2-201ENST00000569776 97 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 OR4H6P-202ENST00000603819 340 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AL390208.1-201ENST00000605885 644 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC100814.1-201ENST00000606963 623 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AL157770.1-201ENST00000623049 439 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC104820.1-201ENST00000624183 307 ntBASIC1.08□□□□□ -2.24
NUP98P52948 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
NUP98P52948 RNU6-359P-201ENST00000365466 108 ntBASIC1.08□□□□□ -2.24
NUP98P52948 RNU1-139P-201ENST00000391307 165 ntBASIC1.08□□□□□ -2.24
NUP98P52948 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 TPMTP2-201ENST00000414372 726 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.08□□□□□ -2.24
NUP98P52948 snoU13.8-201ENST00000458890 104 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC096745.1-201ENST00000509945 370 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC1.08□□□□□ -2.24
NUP98P52948 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.08□□□□□ -2.24
NUP98P52948 AC007490.1-201ENST00000624321 703 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC091965.5-201ENST00000624785 342 ntBASIC1.08□□□□□ -2.24
NUP98P52948 AC095038.3-201ENST00000634439 195 ntBASIC1.08□□□□□ -2.24
NUP98P52948 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.08□□□□□ -2.24
NUP98P52948 NACAP2-201ENST00000318548 624 ntBASIC1.07□□□□□ -2.24
NUP98P52948 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
NUP98P52948 DEFB130D-201ENST00000426866 237 ntBASIC1.07□□□□□ -2.24
NUP98P52948 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.07□□□□□ -2.24
NUP98P52948 AC018437.1-201ENST00000492214 406 ntBASIC1.07□□□□□ -2.24
NUP98P52948 RNU6-703P-201ENST00000516946 107 ntBASIC1.07□□□□□ -2.24
NUP98P52948 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.07□□□□□ -2.24
NUP98P52948 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.07□□□□□ -2.24
NUP98P52948 AC090330.1-201ENST00000588646 764 ntBASIC1.07□□□□□ -2.24
NUP98P52948 AC087045.1-201ENST00000605856 382 ntBASIC1.07□□□□□ -2.24
NUP98P52948 AC022202.1-201ENST00000613515 211 ntBASIC1.07□□□□□ -2.24
NUP98P52948 AL118508.4-201ENST00000624142 1176 ntBASIC1.07□□□□□ -2.24
NUP98P52948 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
NUP98P52948 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.06□□□□□ -2.24
NUP98P52948 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
NUP98P52948 SNORD26-201ENST00000384147 75 ntBASIC1.06□□□□□ -2.24
NUP98P52948 MTCO1P56-201ENST00000401674 224 ntBASIC1.06□□□□□ -2.24
NUP98P52948 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.06□□□□□ -2.24
NUP98P52948 MIR1283-2-201ENST00000408621 87 ntBASIC1.06□□□□□ -2.24
NUP98P52948 RNU2-41P-201ENST00000410991 178 ntBASIC1.06□□□□□ -2.24
NUP98P52948 OR9R1P-201ENST00000412200 877 ntBASIC1.06□□□□□ -2.24
NUP98P52948 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.06□□□□□ -2.24
NUP98P52948 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC1.06□□□□□ -2.24
NUP98P52948 MTCYBP15-201ENST00000433123 1127 ntBASIC1.06□□□□□ -2.24
NUP98P52948 PTGES3P1-201ENST00000439531 483 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.06□□□□□ -2.24
NUP98P52948 RPL7P55-201ENST00000450522 746 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.06□□□□□ -2.24
NUP98P52948 RNA5SP436-201ENST00000516020 115 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AC109329.1-201ENST00000518744 317 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AC011712.1-201ENST00000588959 234 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AC016925.2-201ENST00000605108 242 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AC211469.2-201ENST00000605461 205 ntBASIC1.06□□□□□ -2.24
NUP98P52948 AF129408.1-201ENST00000608767 431 ntBASIC1.06□□□□□ -2.24
NUP98P52948 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.06□□□□□ -2.24
NUP98P52948 AC253576.2-201ENST00000618815 580 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms