Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU1-109P-201ENST00000383960 147 ntBASIC2.47□□□□□ -2.01
CDX1P47902 Y_RNA.409-201ENST00000383990 98 ntBASIC2.47□□□□□ -2.01
CDX1P47902 SNORA7.4-201ENST00000384249 137 ntBASIC2.47□□□□□ -2.01
CDX1P47902 SNORD70.1-201ENST00000391007 85 ntBASIC2.47□□□□□ -2.01
CDX1P47902 RNU6-903P-201ENST00000391270 109 ntBASIC2.47□□□□□ -2.01
CDX1P47902 RPS4XP7-201ENST00000406274 780 ntBASIC2.47□□□□□ -2.01
CDX1P47902 RAP1BP3-201ENST00000407180 549 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.47□□□□□ -2.01
CDX1P47902 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AL353193.1-201ENST00000421444 268 ntBASIC2.47□□□□□ -2.01
CDX1P47902 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AP000705.1-201ENST00000454567 350 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AC006026.2-201ENST00000457376 180 ntBASIC2.47□□□□□ -2.01
CDX1P47902 SCARNA18-201ENST00000459004 134 ntBASIC2.47□□□□□ -2.01
CDX1P47902 SRRM1P2-201ENST00000464531 1192 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AC011005.2-201ENST00000487324 359 ntBASIC2.47□□□□□ -2.01
CDX1P47902 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CDX1P47902 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.47□□□□□ -2.01
CDX1P47902 SNORA25.11-201ENST00000515935 105 ntBASIC2.47□□□□□ -2.01
CDX1P47902 RNA5SP112-201ENST00000515937 99 ntBASIC2.47□□□□□ -2.01
CDX1P47902 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.47□□□□□ -2.01
CDX1P47902 Y_RNA.687-201ENST00000516558 91 ntBASIC2.47□□□□□ -2.01
CDX1P47902 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.47□□□□□ -2.01
CDX1P47902 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AC245505.1-201ENST00000556398 224 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AC009163.5-201ENST00000575421 637 ntBASIC2.47□□□□□ -2.01
CDX1P47902 MIR3616-201ENST00000584070 92 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.47□□□□□ -2.01
CDX1P47902 AL356280.1-201ENST00000603614 379 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AL021997.1-201ENST00000605757 193 ntBASIC2.47□□□□□ -2.01
CDX1P47902 AL031601.2-202ENST00000622650 282 ntBASIC2.47□□□□□ -2.01
CDX1P47902 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.47□□□□□ -2.01
CDX1P47902 MIR7157-201ENST00000635801 60 ntBASIC2.47□□□□□ -2.01
CDX1P47902 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.47□□□□□ -2.01
CDX1P47902 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
CDX1P47902 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.01
CDX1P47902 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CDX1P47902 RNU6-552P-201ENST00000362869 119 ntBASIC2.46□□□□□ -2.02
CDX1P47902 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CDX1P47902 RNU6-434P-201ENST00000384376 107 ntBASIC2.46□□□□□ -2.02
CDX1P47902 SNORD15B-201ENST00000384714 146 ntBASIC2.46□□□□□ -2.02
CDX1P47902 MIR23A-201ENST00000385245 73 ntBASIC2.46□□□□□ -2.02
CDX1P47902 RNU6-1158P-201ENST00000391167 107 ntBASIC2.46□□□□□ -2.02
CDX1P47902 RNU6-607P-201ENST00000411283 108 ntBASIC2.46□□□□□ -2.02
CDX1P47902 BX276092.3-201ENST00000424182 230 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AL606489.2-201ENST00000433886 234 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.46□□□□□ -2.02
CDX1P47902 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.46□□□□□ -2.02
CDX1P47902 CALM1P1-201ENST00000442082 433 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.46□□□□□ -2.02
CDX1P47902 MED28P2-201ENST00000475771 317 ntBASIC2.46□□□□□ -2.02
CDX1P47902 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.46□□□□□ -2.02
CDX1P47902 AL163973.1-201ENST00000484753 577 ntBASIC2.46□□□□□ -2.02
CDX1P47902 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.46□□□□□ -2.02
CDX1P47902 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.46□□□□□ -2.02
CDX1P47902 RNU5B-3P-201ENST00000516601 115 ntBASIC2.46□□□□□ -2.02
CDX1P47902 SCARNA3-201ENST00000517097 143 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.46□□□□□ -2.02
CDX1P47902 AP005435.4-201ENST00000529514 284 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AP002404.1-201ENST00000532005 451 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AP003034.1-201ENST00000534621 422 ntBASIC2.46□□□□□ -2.02
CDX1P47902 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.46□□□□□ -2.02
CDX1P47902 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.46□□□□□ -2.02
CDX1P47902 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.46□□□□□ -2.02
CDX1P47902 MIR4325-201ENST00000583049 90 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AL160281.1-201ENST00000605307 311 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AC005000.2-201ENST00000605468 310 ntBASIC2.46□□□□□ -2.02
CDX1P47902 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.46□□□□□ -2.02
CDX1P47902 AC017083.3-201ENST00000609955 700 ntBASIC2.46□□□□□ -2.02
CDX1P47902 uc_338.25-201ENST00000613756 156 ntBASIC2.46□□□□□ -2.02
CDX1P47902 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.46□□□□□ -2.02
CDX1P47902 AC124864.2-201ENST00000624736 186 ntBASIC2.46□□□□□ -2.02
CDX1P47902 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
CDX1P47902 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CDX1P47902 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CDX1P47902 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.45□□□□□ -2.02
CDX1P47902 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CDX1P47902 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CDX1P47902 RNA5SP374-201ENST00000362939 125 ntBASIC2.45□□□□□ -2.02
CDX1P47902 RNU6-486P-201ENST00000363116 107 ntBASIC2.45□□□□□ -2.02
CDX1P47902 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.45□□□□□ -2.02
CDX1P47902 SNORA48.5-201ENST00000391143 135 ntBASIC2.45□□□□□ -2.02
CDX1P47902 BX682237.1-201ENST00000415016 335 ntBASIC2.45□□□□□ -2.02
CDX1P47902 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.45□□□□□ -2.02
CDX1P47902 AC138623.1-201ENST00000418060 216 ntBASIC2.45□□□□□ -2.02
CDX1P47902 AC097463.2-201ENST00000421074 142 ntBASIC2.45□□□□□ -2.02
CDX1P47902 AL669831.1-202ENST00000428504 417 ntBASIC2.45□□□□□ -2.02
CDX1P47902 AL365400.1-201ENST00000431854 640 ntBASIC2.45□□□□□ -2.02
CDX1P47902 MICF-203ENST00000432679 129 ntBASIC2.45□□□□□ -2.02
CDX1P47902 GTF2IP13-201ENST00000438487 386 ntBASIC2.45□□□□□ -2.02
CDX1P47902 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.45□□□□□ -2.02
CDX1P47902 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.45□□□□□ -2.02
CDX1P47902 PRPS1P1-201ENST00000445305 876 ntBASIC2.45□□□□□ -2.02
CDX1P47902 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.45□□□□□ -2.02
CDX1P47902 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms