Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC007547.1-201ENST00000462177 490 ntBASIC2.58□□□□□ -2
NKX2-1P43699 RPL31P41-201ENST00000477967 372 ntBASIC2.58□□□□□ -2
NKX2-1P43699 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC2.58□□□□□ -2
NKX2-1P43699 AC011005.2-201ENST00000487324 359 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC018710.1-201ENST00000506509 158 ntBASIC2.58□□□□□ -2
NKX2-1P43699 HIGD1AP13-201ENST00000509878 289 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC104619.4-201ENST00000510773 249 ntBASIC2.58□□□□□ -2
NKX2-1P43699 SNORA14.1-201ENST00000516113 141 ntBASIC2.58□□□□□ -2
NKX2-1P43699 RNU6-189P-201ENST00000516120 101 ntBASIC2.58□□□□□ -2
NKX2-1P43699 SNORA25.17-201ENST00000517184 124 ntBASIC2.58□□□□□ -2
NKX2-1P43699 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.58□□□□□ -2
NKX2-1P43699 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX2-1P43699 AC023050.3-201ENST00000541142 333 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.58□□□□□ -2
NKX2-1P43699 AL121579.1-201ENST00000555129 305 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC020895.1-201ENST00000595362 272 ntBASIC2.58□□□□□ -2
NKX2-1P43699 BNIP3P25-201ENST00000596023 559 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC073539.2-201ENST00000597113 165 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AL355877.2-201ENST00000603670 358 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC024220.1-201ENST00000603675 484 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC021646.1-201ENST00000605469 484 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC092807.2-201ENST00000609367 243 ntBASIC2.58□□□□□ -2
NKX2-1P43699 U2.17-201ENST00000611454 95 ntBASIC2.58□□□□□ -2
NKX2-1P43699 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX2-1P43699 UCA1.1-201ENST00000620952 75 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC034229.5-201ENST00000624258 185 ntBASIC2.58□□□□□ -2
NKX2-1P43699 AC138915.1-201ENST00000565427 1685 ntBASIC2.57□□□□□ -2
NKX2-1P43699 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
NKX2-1P43699 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
NKX2-1P43699 RNU4-35P-201ENST00000362588 141 ntBASIC2.57□□□□□ -2
NKX2-1P43699 Y_RNA.378-201ENST00000365652 113 ntBASIC2.57□□□□□ -2
NKX2-1P43699 MIR218-2-201ENST00000385006 110 ntBASIC2.57□□□□□ -2
NKX2-1P43699 MIR518D-201ENST00000385014 87 ntBASIC2.57□□□□□ -2
NKX2-1P43699 MIR34A-201ENST00000385130 110 ntBASIC2.57□□□□□ -2
NKX2-1P43699 SNORD37.1-201ENST00000390968 65 ntBASIC2.57□□□□□ -2
NKX2-1P43699 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 RPL21P90-201ENST00000415692 466 ntBASIC2.57□□□□□ -2
NKX2-1P43699 RPLP0P7-201ENST00000416050 667 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 AL513185.2-201ENST00000425543 193 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.57□□□□□ -2
NKX2-1P43699 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.57□□□□□ -2
NKX2-1P43699 NDUFA5P4-201ENST00000436704 385 ntBASIC2.57□□□□□ -2
NKX2-1P43699 RPL23AP58-201ENST00000440453 469 ntBASIC2.57□□□□□ -2
NKX2-1P43699 BTF3P15-201ENST00000455606 336 ntBASIC2.57□□□□□ -2
NKX2-1P43699 RN7SL542P-201ENST00000467147 294 ntBASIC2.57□□□□□ -2
NKX2-1P43699 DYNLL1P5-201ENST00000467158 270 ntBASIC2.57□□□□□ -2
NKX2-1P43699 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.57□□□□□ -2
NKX2-1P43699 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.57□□□□□ -2
NKX2-1P43699 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.57□□□□□ -2
NKX2-1P43699 RNU6-56P-201ENST00000516986 93 ntBASIC2.57□□□□□ -2
NKX2-1P43699 RN7SKP256-201ENST00000517201 314 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AC023632.4-201ENST00000517783 191 ntBASIC2.57□□□□□ -2
NKX2-1P43699 TRMT10BP1-201ENST00000519377 943 ntBASIC2.57□□□□□ -2
NKX2-1P43699 BTF3P12-201ENST00000519620 469 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AC090136.1-201ENST00000520009 240 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.57□□□□□ -2
NKX2-1P43699 AC106782.4-201ENST00000568264 210 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.57□□□□□ -2
NKX2-1P43699 AC010620.2-201ENST00000600135 313 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AL391813.1-201ENST00000603098 260 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AC012119.1-201ENST00000603184 222 ntBASIC2.57□□□□□ -2
NKX2-1P43699 AL022345.1-201ENST00000607292 135 ntBASIC2.57□□□□□ -2
NKX2-1P43699 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.57□□□□□ -2
NKX2-1P43699 AC090617.7-201ENST00000623952 126 ntBASIC2.57□□□□□ -2
NKX2-1P43699 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.57□□□□□ -2
NKX2-1P43699 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.57□□□□□ -2
NKX2-1P43699 AL034408.1-202ENST00000636088 415 ntBASIC2.57□□□□□ -2
NKX2-1P43699 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.57□□□□□ -2
NKX2-1P43699 Z83843.1-201ENST00000604070 3685 ntBASIC2.56□□□□□ -2
NKX2-1P43699 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.56□□□□□ -2
NKX2-1P43699 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
NKX2-1P43699 RNU6-845P-201ENST00000362578 103 ntBASIC2.56□□□□□ -2
NKX2-1P43699 SNORA72.1-201ENST00000363485 129 ntBASIC2.56□□□□□ -2
NKX2-1P43699 SNORD14B-201ENST00000364533 90 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RNU6-1179P-201ENST00000384667 107 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RN7SKP32-201ENST00000410167 303 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RNU2-49P-201ENST00000410666 184 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RNA5SP344-201ENST00000411081 104 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AL592148.1-201ENST00000413568 445 ntBASIC2.56□□□□□ -2
NKX2-1P43699 SYF2P2-201ENST00000417620 583 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.56□□□□□ -2
NKX2-1P43699 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.56□□□□□ -2
NKX2-1P43699 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.56□□□□□ -2
NKX2-1P43699 AC093151.1-201ENST00000427711 313 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AC104332.2-201ENST00000429959 156 ntBASIC2.56□□□□□ -2
NKX2-1P43699 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.56□□□□□ -2
NKX2-1P43699 AL161651.1-201ENST00000440882 223 ntBASIC2.56□□□□□ -2
NKX2-1P43699 PRPS1P1-201ENST00000445305 876 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RPL21P23-201ENST00000446654 460 ntBASIC2.56□□□□□ -2
NKX2-1P43699 MTND5P20-201ENST00000448677 143 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RBMY2UP-201ENST00000453474 324 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AL583843.1-201ENST00000456070 346 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RNU7-66P-201ENST00000459469 62 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AP004217.1-201ENST00000480579 346 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms