Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC008264.2-201ENST00000610193 3731 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 Y_RNA.89-201ENST00000363031 102 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 RNY3P3-201ENST00000363816 102 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 Y_RNA.248-201ENST00000364501 109 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 RNU6-877P-201ENST00000383868 107 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 SNORD37.1-201ENST00000390968 65 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 RNU6-1077P-201ENST00000410506 102 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.1□□□□□ -1.91
SHMT1P34896 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.1□□□□□ -1.91
SHMT1P34896 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 GTF2IP20-201ENST00000431663 360 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 AL513328.1-201ENST00000446460 224 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.1□□□□□ -1.91
SHMT1P34896 SUMO2P6-201ENST00000505273 288 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT1P34896 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 SNORA9.3-201ENST00000516383 129 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 RNU6-1178P-201ENST00000516674 107 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 SNORD60.2-201ENST00000516883 86 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 SNORA31.26-201ENST00000517250 137 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AP003122.3-201ENST00000526316 255 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AC084851.1-201ENST00000529105 249 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.1□□□□□ -1.91
SHMT1P34896 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.1□□□□□ -1.91
SHMT1P34896 RBM11P1-201ENST00000604951 799 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AC024940.5-201ENST00000622889 474 ntBASIC3.1□□□□□ -1.91
SHMT1P34896 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.1□□□□□ -1.91
SHMT1P34896 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.1□□□□□ -1.91
SHMT1P34896 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.1□□□□□ -1.91
SHMT1P34896 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SHMT1P34896 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SHMT1P34896 Y_RNA.38-201ENST00000362617 102 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 Y_RNA.295-201ENST00000364918 102 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 MIR181B1-201ENST00000385240 110 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SHMT1P34896 RNA5SP38-201ENST00000410750 119 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.09□□□□□ -1.91
SHMT1P34896 SNRPEP10-201ENST00000420249 274 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.09□□□□□ -1.91
SHMT1P34896 AL139415.2-201ENST00000431968 163 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 CALM1P1-201ENST00000442082 433 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 LRRC34P2-201ENST00000514850 553 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 RNU6-928P-201ENST00000516876 104 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AL137161.1-201ENST00000532231 390 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AL157871.3-201ENST00000557231 293 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.09□□□□□ -1.91
SHMT1P34896 AC092325.1-201ENST00000566449 554 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 MIR4635-201ENST00000583759 79 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 DUSP12P1-201ENST00000612874 516 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AC002553.4-201ENST00000616896 331 ntBASIC3.09□□□□□ -1.91
SHMT1P34896 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.09□□□□□ -1.91
SHMT1P34896 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.09□□□□□ -1.91
SHMT1P34896 AL354685.2-201ENST00000448218 1447 ntBASIC3.09□□□□□ -1.92
SHMT1P34896 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHMT1P34896 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHMT1P34896 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.08□□□□□ -1.92
SHMT1P34896 NACAP2-201ENST00000318548 624 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 RNU6-534P-201ENST00000364877 106 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 RNU6-395P-201ENST00000365662 106 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SHMT1P34896 AL606923.1-201ENST00000406616 190 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 RNU6-193P-201ENST00000410977 107 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 RPLP0P7-201ENST00000416050 667 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AL139413.1-201ENST00000421309 217 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 HSPE1P1-201ENST00000421494 318 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.08□□□□□ -1.92
SHMT1P34896 MRPS10P2-201ENST00000431226 381 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.08□□□□□ -1.92
SHMT1P34896 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.08□□□□□ -1.92
SHMT1P34896 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.08□□□□□ -1.92
SHMT1P34896 RPL12P25-201ENST00000455592 494 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 MTCO3P38-201ENST00000468910 766 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 RPL23AP11-201ENST00000475260 469 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.08□□□□□ -1.92
SHMT1P34896 AC104136.1-201ENST00000512969 394 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 SNORA31.1-201ENST00000515993 133 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 SNORA31.5-201ENST00000516190 133 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC109329.2-201ENST00000519658 482 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.08□□□□□ -1.92
SHMT1P34896 MTND4P7-201ENST00000523876 130 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC007536.1-201ENST00000533382 349 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC243972.3-201ENST00000539655 198 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC068135.2-201ENST00000569293 1028 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 MIR5692A1-201ENST00000580523 69 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.08□□□□□ -1.92
SHMT1P34896 AP000907.4-201ENST00000604143 237 ntBASIC3.08□□□□□ -1.92
SHMT1P34896 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHMT1P34896 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHMT1P34896 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHMT1P34896 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHMT1P34896 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHMT1P34896 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHMT1P34896 SNORD62.1-201ENST00000362541 86 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 594.7 ms