Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 NDUFS5P1-201ENST00000405668 289 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 FCF1P10-201ENST00000407590 479 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 Y_RNA.598-201ENST00000410480 95 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 BTF3L4P3-201ENST00000418879 476 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 ZNF90P2-204ENST00000419323 1075 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 RPS15AP12-201ENST00000419498 388 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 CYCSP49-201ENST00000420810 319 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 AC007283.2-201ENST00000424739 197 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 AC093106.2-201ENST00000428212 385 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXA9P31269 SSXP1-201ENST00000453640 473 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXA9P31269 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA9P31269 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.08□□□□□ -2.08
HOXA9P31269 RAP1BP2-201ENST00000478270 544 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 MTND1P3-201ENST00000484956 952 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA9P31269 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA9P31269 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXA9P31269 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.08□□□□□ -2.08
HOXA9P31269 RNU5F-8P-201ENST00000515941 111 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 RNA5SP337-201ENST00000517007 109 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 RNU2-46P-201ENST00000517038 113 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXA9P31269 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA9P31269 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXA9P31269 AL121917.1-203ENST00000605534 577 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 FTX_3.1-201ENST00000610451 147 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HOXA9P31269 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXA9P31269 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXA9P31269 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA9P31269 RNU5E-1-201ENST00000362477 120 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 RNU6-1167P-201ENST00000363227 94 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 RNU5E-6P-201ENST00000365574 115 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 SNORA51.11-201ENST00000384442 131 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 RNU6-297P-201ENST00000384636 107 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 RNU6-220P-201ENST00000390919 107 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA9P31269 RNU2-62P-201ENST00000410868 191 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 HMGB3P2-201ENST00000411913 584 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXA9P31269 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXA9P31269 ELOCP14-201ENST00000428070 331 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXA9P31269 HMGB1P18-201ENST00000438801 619 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 ELOCP7-201ENST00000439968 331 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AL022238.1-201ENST00000442557 355 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 MTND6P13-201ENST00000443510 523 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 OSTCP8-201ENST00000445117 448 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA9P31269 CECR9-201ENST00000453421 199 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 MTND1P12-201ENST00000455231 147 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXA9P31269 AL160314.1-201ENST00000490836 438 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AC138853.1-201ENST00000503549 823 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA9P31269 AC010587.1-201ENST00000505809 469 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA9P31269 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.07□□□□□ -2.08
HOXA9P31269 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA9P31269 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA9P31269 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA9P31269 AL358072.1-201ENST00000604156 575 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 Z94722.1-201ENST00000604328 474 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AL359999.1-201ENST00000604513 294 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AC007363.1-201ENST00000604736 620 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA9P31269 AC244517.12-201ENST00000623581 663 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 AC025048.6-202ENST00000627667 438 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 MIR3974-201ENST00000637126 96 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXA9P31269 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXA9P31269 AL359851.1-201ENST00000569460 4997 ntBASIC2.07□□□□□ -2.08
HOXA9P31269 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
HOXA9P31269 U8.3-201ENST00000363321 132 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 SMIM11P1-201ENST00000369586 178 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 RNY3P9-201ENST00000384727 106 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 MIR17-201ENST00000385012 84 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 RNA5SP338-201ENST00000410495 85 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AC090960.1-201ENST00000421072 306 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 HMGN2P38-201ENST00000423806 265 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.06□□□□□ -2.08
HOXA9P31269 ZNF863P-201ENST00000426746 417 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA9P31269 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA9P31269 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.06□□□□□ -2.08
HOXA9P31269 AL031667.1-201ENST00000440222 725 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 RPL7P12-201ENST00000446719 750 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 SNRPGP9-201ENST00000456025 225 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AC013267.1-201ENST00000458227 267 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXA9P31269 RPS29P20-201ENST00000489592 171 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AC090255.1-201ENST00000495779 349 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AC105252.1-201ENST00000503089 286 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 AC010486.3-201ENST00000511602 785 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 RNU7-193P-201ENST00000516723 65 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 MTND2P38-201ENST00000522536 667 ntBASIC2.06□□□□□ -2.08
HOXA9P31269 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA9P31269 AK6P1-201ENST00000540219 478 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms