Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.688-201ENST00000516565 95 ntBASIC2.34□□□□□ -2.03
SDC3O75056 RNU6-1220P-201ENST00000517126 108 ntBASIC2.34□□□□□ -2.03
SDC3O75056 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.34□□□□□ -2.03
SDC3O75056 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.34□□□□□ -2.03
SDC3O75056 AC025755.1-201ENST00000521306 278 ntBASIC2.34□□□□□ -2.03
SDC3O75056 OR4R1P-201ENST00000529879 463 ntBASIC2.34□□□□□ -2.03
SDC3O75056 OR5BN1P-201ENST00000532955 829 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.34□□□□□ -2.03
SDC3O75056 AL157871.3-201ENST00000557231 293 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC3O75056 AC137800.2-201ENST00000574375 120 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AL158827.2-201ENST00000602494 330 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AC008121.1-201ENST00000603244 268 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AC064872.1-201ENST00000604823 1072 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AC103810.6-201ENST00000606708 136 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AL139286.2-201ENST00000606838 396 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
SDC3O75056 AL158063.1-201ENST00000615349 536 ntBASIC2.34□□□□□ -2.03
SDC3O75056 MIR6134-201ENST00000617606 109 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AL691447.3-201ENST00000635020 330 ntBASIC2.34□□□□□ -2.03
SDC3O75056 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SDC3O75056 CDC27P3-201ENST00000635418 1910 ntBASIC2.33□□□□□ -2.04
SDC3O75056 OR56A5-201ENST00000340110 738 ntBASIC2.33□□□□□ -2.04
SDC3O75056 Y_RNA.33-201ENST00000362591 102 ntBASIC2.33□□□□□ -2.04
SDC3O75056 RNU6-395P-201ENST00000365662 106 ntBASIC2.33□□□□□ -2.04
SDC3O75056 SNORA24.1-201ENST00000384401 135 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AL162578.1-201ENST00000406202 378 ntBASIC2.33□□□□□ -2.04
SDC3O75056 RN7SKP142-201ENST00000411236 328 ntBASIC2.33□□□□□ -2.04
SDC3O75056 OR51A5P-201ENST00000415429 942 ntBASIC2.33□□□□□ -2.04
SDC3O75056 DPH3P2-201ENST00000422618 250 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.33□□□□□ -2.04
SDC3O75056 ISCA1P6-201ENST00000427740 390 ntBASIC2.33□□□□□ -2.04
SDC3O75056 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC3O75056 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SDC3O75056 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC3O75056 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.33□□□□□ -2.04
SDC3O75056 RPS27P27-201ENST00000498779 255 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC108078.2-201ENST00000510750 236 ntBASIC2.33□□□□□ -2.04
SDC3O75056 RNU6-581P-201ENST00000516214 105 ntBASIC2.33□□□□□ -2.04
SDC3O75056 IGKV3-31-201ENST00000523109 329 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AP002453.2-201ENST00000533503 320 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC010186.2-204ENST00000537668 439 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC3O75056 MIR4782-201ENST00000577987 79 ntBASIC2.33□□□□□ -2.04
SDC3O75056 MIR5092-201ENST00000583139 88 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC110760.3-201ENST00000598794 467 ntBASIC2.33□□□□□ -2.04
SDC3O75056 SEPT7P9-203ENST00000604116 343 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC087752.4-201ENST00000605911 462 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC109347.2-201ENST00000610220 349 ntBASIC2.33□□□□□ -2.04
SDC3O75056 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC012409.4-201ENST00000612923 249 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC011890.2-201ENST00000613393 294 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC138649.3-201ENST00000622154 254 ntBASIC2.33□□□□□ -2.04
SDC3O75056 Z69908.1-201ENST00000622603 247 ntBASIC2.33□□□□□ -2.04
SDC3O75056 MIR1291-201ENST00000627649 87 ntBASIC2.33□□□□□ -2.04
SDC3O75056 AC110994.2-201ENST00000635481 492 ntBASIC2.33□□□□□ -2.04
SDC3O75056 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.33□□□□□ -2.04
SDC3O75056 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SDC3O75056 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.32□□□□□ -2.04
SDC3O75056 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
SDC3O75056 AL356320.1-201ENST00000429616 163 ntBASIC2.32□□□□□ -2.04
SDC3O75056 MICF-203ENST00000432679 129 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC3O75056 AL031667.1-201ENST00000440222 725 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AC079781.2-201ENST00000446424 169 ntBASIC2.32□□□□□ -2.04
SDC3O75056 FABP5P13-201ENST00000452144 328 ntBASIC2.32□□□□□ -2.04
SDC3O75056 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC3O75056 AC092001.1-201ENST00000453012 261 ntBASIC2.32□□□□□ -2.04
SDC3O75056 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.32□□□□□ -2.04
SDC3O75056 AL441985.1-201ENST00000457727 251 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AC133134.1-201ENST00000466800 359 ntBASIC2.32□□□□□ -2.04
SDC3O75056 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.32□□□□□ -2.04
SDC3O75056 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.32□□□□□ -2.04
SDC3O75056 RPL23AP49-201ENST00000492925 468 ntBASIC2.32□□□□□ -2.04
SDC3O75056 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.32□□□□□ -2.04
SDC3O75056 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.32□□□□□ -2.04
SDC3O75056 RNA5SP82-201ENST00000516707 92 ntBASIC2.32□□□□□ -2.04
SDC3O75056 Y_RNA.695-201ENST00000516715 107 ntBASIC2.32□□□□□ -2.04
SDC3O75056 RNU6-572P-201ENST00000516724 80 ntBASIC2.32□□□□□ -2.04
SDC3O75056 SNORA18.6-201ENST00000516792 115 ntBASIC2.32□□□□□ -2.04
SDC3O75056 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
SDC3O75056 ADI1P3-201ENST00000549509 470 ntBASIC2.32□□□□□ -2.04
SDC3O75056 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.32□□□□□ -2.04
SDC3O75056 MYL12BP1-201ENST00000569826 507 ntBASIC2.32□□□□□ -2.04
SDC3O75056 MIR5571-201ENST00000577998 113 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.32□□□□□ -2.04
SDC3O75056 MIR4524B-201ENST00000581569 115 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AC245014.2-201ENST00000603689 287 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AC246785.4-201ENST00000605374 287 ntBASIC2.32□□□□□ -2.04
SDC3O75056 uc_338.14-201ENST00000613162 166 ntBASIC2.32□□□□□ -2.04
SDC3O75056 AC010678.1-201ENST00000614118 713 ntBASIC2.32□□□□□ -2.04
SDC3O75056 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.32□□□□□ -2.04
SDC3O75056 MIR6873-201ENST00000622788 63 ntBASIC2.32□□□□□ -2.04
SDC3O75056 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC3O75056 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
SDC3O75056 ELL2P3-201ENST00000457883 1602 ntBASIC2.31□□□□□ -2.04
SDC3O75056 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SDC3O75056 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SDC3O75056 Y_RNA.77-201ENST00000362962 107 ntBASIC2.31□□□□□ -2.04
SDC3O75056 RNU6-61P-201ENST00000365528 109 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms