Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RN7SKP145-201ENST00000363291 303 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RNU6-309P-201ENST00000364573 106 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RNU6-1080P-201ENST00000383982 107 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 SNORD78.1-201ENST00000390866 65 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 MIR208B-201ENST00000401172 77 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RNA5SP103-201ENST00000459503 118 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RPS23P2-201ENST00000463671 415 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RN7SL329P-201ENST00000467740 299 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 SNORA70.12-201ENST00000516084 153 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 RN7SL356P-201ENST00000582228 248 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 AL162713.1-201ENST00000604480 262 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 AC025754.2-201ENST00000606491 432 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 MIR548AY-201ENST00000617669 107 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PCDHGA4Q9Y5G9 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 Y_RNA.219-201ENST00000364232 113 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 Y_RNA.361-201ENST00000365515 120 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 SNORA72-201ENST00000384339 132 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 SNORD12C-201ENST00000386307 89 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 MIR1278-201ENST00000408753 81 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 SNORA36B-201ENST00000410438 131 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 RNU6-592P-201ENST00000411333 103 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 NDUFS5P4-201ENST00000412983 318 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 TOMM22P2-201ENST00000430735 237 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 RN7SL197P-201ENST00000466981 299 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC090525.1-201ENST00000479116 478 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC103975.1-201ENST00000482506 483 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 RNU6-1146P-201ENST00000516282 102 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 RNU6-65P-201ENST00000516332 98 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC060780.2-201ENST00000589047 198 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 AC090607.5-201ENST00000615692 224 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 MIR6134-201ENST00000617606 109 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 MIR6837-201ENST00000620884 64 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 MIR3529-201ENST00000637713 78 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 OR14L1P-202ENST00000641545 3009 ntBASIC5.47□□□□□ -1.53
PCDHGA4Q9Y5G9 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.46□□□□□ -1.53
PCDHGA4Q9Y5G9 ADAM3A-203ENST00000461344 2157 ntBASIC5.46□□□□□ -1.53
PCDHGA4Q9Y5G9 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 AC004925.1-201ENST00000624256 2706 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 RNA5SP235-201ENST00000365411 114 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 RNA5SP30-201ENST00000365552 115 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 MIR488-201ENST00000365739 83 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 RNU6-1113P-201ENST00000384348 107 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 Y_RNA.544-201ENST00000384650 113 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 MIR585-201ENST00000384887 94 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 MIR450A2-201ENST00000385022 100 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 U3.26-201ENST00000391236 204 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 FTH1P15-201ENST00000406984 280 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 AC009963.2-201ENST00000453431 138 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 RPL21P10-201ENST00000463521 490 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 AC091868.1-201ENST00000508746 304 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 RN7SKP43-201ENST00000516173 320 ntBASIC5.46□□□□□ -1.54
PCDHGA4Q9Y5G9 RNU7-115P-201ENST00000516433 55 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms