Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 U3.45-201ENST00000607547 219 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AC022140.2-201ENST00000623500 188 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AL133216.2-202ENST00000634512 349 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 ZNF807-201ENST00000328088 1707 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 SNORD116-11-201ENST00000383882 92 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.387-201ENST00000383918 102 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA1.3-201ENST00000384676 136 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 RN7SKP27-201ENST00000410684 333 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 MYL8P-204ENST00000431574 518 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AC107399.1-201ENST00000451226 265 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA84-201ENST00000459229 133 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 RNU7-138P-201ENST00000459479 64 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 RPL7P43-201ENST00000478876 753 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.682-201ENST00000516457 100 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 RNA5SP454-201ENST00000517231 127 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AL355375.2-201ENST00000574825 175 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AL645944.1-201ENST00000603857 493 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AC002044.1-201ENST00000606707 158 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 FTX_3.1-201ENST00000610451 147 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 uc_338.25-201ENST00000613756 156 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AL138726.1-201ENST00000614873 333 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 FAM157A-202ENST00000615155 405 ntBASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LIMCH1Q9UPQ0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RNU4-79P-201ENST00000362764 141 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.135-201ENST00000363439 95 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RNU1-33P-201ENST00000364249 162 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-214P-201ENST00000384130 107 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.474-201ENST00000384341 102 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RPL21P3-201ENST00000395517 478 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AP000567.1-201ENST00000406413 156 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 MIR548K-201ENST00000408406 116 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RNU2-3P-201ENST00000410144 191 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC005019.1-201ENST00000436455 431 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AL359672.1-201ENST00000442302 409 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RPS12P18-201ENST00000442381 270 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC146507.2-201ENST00000460608 476 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC091153.1-201ENST00000466297 402 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC117503.1-201ENST00000472241 394 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC011005.2-201ENST00000487324 359 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-1088P-201ENST00000516850 104 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC009902.1-201ENST00000519351 183 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 CBX3P7-201ENST00000532876 502 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AC100830.2-201ENST00000581636 240 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 AL355598.1-201ENST00000604169 202 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 ATP5A1P2-202ENST00000616464 443 ntBASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LIMCH1Q9UPQ0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.324-201ENST00000365165 102 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.339-201ENST00000365325 102 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.431-201ENST00000384086 102 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.460-201ENST00000384255 102 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 CYCSP33-201ENST00000414485 327 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AL627311.1-201ENST00000431514 115 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 SNRPEP4-201ENST00000435815 279 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 RPL32P28-201ENST00000443577 397 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 Y_RNA.635-201ENST00000459041 101 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 RNA5SP310-201ENST00000459084 116 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AC008155.2-201ENST00000464337 397 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AL135752.1-201ENST00000479477 471 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-273P-201ENST00000516937 96 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AC025755.1-201ENST00000521306 278 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 SYF2P1-201ENST00000550658 413 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 MIR4790-201ENST00000577799 79 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA51-201ENST00000606420 132 ntBASIC3.74□□□□□ -1.81
LIMCH1Q9UPQ0 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms