Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC034102.8-201ENST00000615146 484 ntBASIC3.03□□□□□ -1.92
SIX4Q9UIU6 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.03□□□□□ -1.92
SIX4Q9UIU6 AC092435.3-201ENST00000565538 3654 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 UBE2L2-201ENST00000254302 429 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RNU6-512P-201ENST00000364438 103 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 MIR181A2-201ENST00000384863 110 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 MIR493-201ENST00000385254 89 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RNU1-101P-201ENST00000391171 127 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL592114.1-201ENST00000403842 483 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RAP1BP3-201ENST00000407180 549 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL592045.1-201ENST00000429867 352 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RPS15AP27-201ENST00000449183 343 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 SCARNA18-201ENST00000459004 134 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL049873.1-201ENST00000480540 376 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RNA5SP367-201ENST00000516557 118 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RNU6-914P-201ENST00000516749 109 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RNU6-1314P-201ENST00000517139 104 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RNU6-711P-201ENST00000517255 106 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RPL7P20-201ENST00000520308 745 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 BNIP3P6-201ENST00000549284 499 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL133393.1-201ENST00000603277 287 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC098826.3-201ENST00000603823 466 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AL138889.2-201ENST00000603883 242 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC092807.2-201ENST00000609367 243 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC104985.2-201ENST00000620598 500 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AC005858.4-201ENST00000623191 700 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 AP003400.5-201ENST00000624827 617 ntBASIC3.02□□□□□ -1.93
SIX4Q9UIU6 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SIX4Q9UIU6 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 Y_RNA.167-201ENST00000363735 109 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 SNORA32.2-201ENST00000384049 122 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 RNU6-767P-201ENST00000384132 107 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 Y_RNA.534-201ENST00000384599 112 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 RNU4-26P-201ENST00000410270 107 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 EEF1A1P40-201ENST00000412883 573 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC080125.1-201ENST00000414888 684 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 PDCL2P1-201ENST00000419302 352 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AL160275.3-201ENST00000423876 471 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 SNRPEP4-201ENST00000435815 279 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC105272.1-201ENST00000438604 198 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC087588.1-201ENST00000462203 316 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC003982.1-202ENST00000469928 248 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 RPL21P93-201ENST00000480465 489 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 SUMO2P6-201ENST00000505273 288 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC009901.1-201ENST00000506703 541 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC112206.3-201ENST00000514578 389 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AL161798.1-201ENST00000604630 131 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC021646.1-201ENST00000605469 484 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 DUSP12P1-201ENST00000612874 516 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC068831.7-201ENST00000616954 363 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 AC009248.2-201ENST00000619826 254 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 MTND5P19-201ENST00000424872 1794 ntBASIC3.01□□□□□ -1.93
SIX4Q9UIU6 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.01□□□□□ -1.93
SIX4Q9UIU6 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3□□□□□ -1.93
SIX4Q9UIU6 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SIX4Q9UIU6 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SIX4Q9UIU6 RNU6-1167P-201ENST00000363227 94 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 RNU1-112P-201ENST00000364401 164 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 RNU6-715P-201ENST00000365204 103 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 RNU6-1009P-201ENST00000390996 107 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 MIR1290-201ENST00000408735 78 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
SIX4Q9UIU6 RNU6-1077P-201ENST00000410506 102 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 RNU2-41P-201ENST00000410991 178 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 YPEL5P1-201ENST00000419731 367 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3□□□□□ -1.93
SIX4Q9UIU6 AC007919.1-201ENST00000429380 217 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 AL356867.1-201ENST00000429623 299 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 RAB6C-AS1-202ENST00000433431 123 ntBASIC3□□□□□ -1.93
SIX4Q9UIU6 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3□□□□□ -1.93
SIX4Q9UIU6 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3□□□□□ -1.93
SIX4Q9UIU6 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms