Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CISD1P1-201ENST00000393907 327 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 RNU4-53P-201ENST00000410828 140 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 BX295541.1-201ENST00000417774 250 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 RPL31P35-201ENST00000431058 377 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 RPS15AP28-201ENST00000435088 386 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 FABP5P14-201ENST00000437273 393 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC018634.1-201ENST00000437554 401 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 HIGD1AP2-201ENST00000446367 280 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 FAM92A1P2-202ENST00000504766 877 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC090572.1-201ENST00000519251 160 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC004486.1-201ENST00000546846 233 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 MIR3199-1-201ENST00000582434 88 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 MIR4765-201ENST00000585007 77 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL158063.1-201ENST00000615349 536 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 Z69908.1-201ENST00000622603 247 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 AL157786.1-207ENST00000627771 695 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 RNU6-179P-201ENST00000363350 107 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 RNU6-61P-201ENST00000365528 109 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 RNU6-748P-201ENST00000384648 107 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 MIR518D-201ENST00000385014 87 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 MIR1302-8-201ENST00000408342 128 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 Z98742.2-201ENST00000431564 187 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AIG1P1-201ENST00000503376 148 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC116562.3-201ENST00000506136 177 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC023141.11-201ENST00000508864 202 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC008413.1-201ENST00000511864 177 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 SCARNA3-201ENST00000517097 143 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC068587.5-201ENST00000528506 175 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC040904.1-201ENST00000590850 223 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC008121.1-201ENST00000603244 268 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC064872.1-201ENST00000604823 1072 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AL121992.2-201ENST00000606262 256 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 MIR98-201ENST00000606724 119 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 U6.42-201ENST00000618440 107 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC138649.3-201ENST00000622154 254 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.34□□□□□ -2.03
LHX3Q9UBR4 AL359854.1-201ENST00000614203 1594 ntBASIC2.34□□□□□ -2.03
LHX3Q9UBR4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
LHX3Q9UBR4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.34□□□□□ -2.04
LHX3Q9UBR4 AL109809.4-201ENST00000603520 2185 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MIR412-201ENST00000362142 91 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 RNA5SP126-201ENST00000365092 109 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 SNORA75B-201ENST00000384053 137 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MIR218-1-201ENST00000384999 110 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AL445529.1-201ENST00000398713 389 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AL591416.1-201ENST00000404015 867 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 SNORA11.2-201ENST00000408318 127 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 RNU6-248P-201ENST00000410720 107 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 RNU6-387P-201ENST00000411331 105 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 RNA5SP111-201ENST00000411386 101 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MTND3P17-201ENST00000416968 344 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AL139413.1-201ENST00000421309 217 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MTATP6P16-201ENST00000434543 526 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AL353706.1-201ENST00000436728 494 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC004383.1-201ENST00000438135 289 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 USP9YP29-201ENST00000445112 563 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 AC009961.3-201ENST00000449832 765 ntBASIC2.33□□□□□ -2.04
LHX3Q9UBR4 MTND1P27-201ENST00000451117 902 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms