Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-842P-201ENST00000384269 107 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU6-331P-201ENST00000384724 107 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 MIR606-201ENST00000384851 96 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 MIR521-1-201ENST00000384902 87 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AP000567.1-201ENST00000406413 156 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC006946.1-201ENST00000429106 328 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC083863.1-201ENST00000438811 231 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 HMGB1P37-201ENST00000439613 609 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AL035666.1-201ENST00000446195 348 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RPL21P11-201ENST00000461458 483 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RPL23AP49-201ENST00000492925 468 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC022493.2-201ENST00000506122 481 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 PTP4A1P4-201ENST00000512479 322 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU6-327P-201ENST00000516270 127 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU6-1045P-201ENST00000516321 107 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC007991.1-201ENST00000522680 631 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC005476.1-201ENST00000554427 397 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 GNRHR2P1-201ENST00000555315 631 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AC040896.1-201ENST00000613819 479 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AL138880.2-201ENST00000616214 239 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 MIR6134-201ENST00000617606 109 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 MIR423-201ENST00000362201 94 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 RNA5SP322-201ENST00000363617 119 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 RNU6-174P-201ENST00000410406 106 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 RNU6-55P-201ENST00000411092 107 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AC011816.1-201ENST00000441346 546 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 NIPA2P5-201ENST00000452282 464 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 RPS27AP10-201ENST00000496103 208 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.661-201ENST00000516003 99 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 RNA5SP384-201ENST00000516615 116 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AP005902.1-201ENST00000521358 186 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 VN1R107P-201ENST00000601784 209 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AL020997.2-201ENST00000602607 184 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AC024153.1-201ENST00000603103 365 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 SRGNP1-201ENST00000603392 451 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 HSPE1P7-201ENST00000604681 321 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AL360085.1-201ENST00000604713 532 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 MIR3976-201ENST00000606807 139 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 AC083806.3-201ENST00000614016 455 ntBASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.89□□□□□ -1.79
TRIM39Q9HCM9 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 ADAM3A-203ENST00000461344 2157 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 RNU6-527P-201ENST00000363425 104 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 RNU6-270P-201ENST00000364131 105 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.252-201ENST00000364556 101 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 RNA5SP97-201ENST00000365006 84 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 U8.8-201ENST00000365399 135 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 Z98749.2-208ENST00000381646 500 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 SNORA22B-201ENST00000383876 138 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.428-201ENST00000384078 102 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.463-201ENST00000384271 102 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL591034.2-201ENST00000402839 359 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 PMCHL1-202ENST00000423102 261 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 RPL7P2-201ENST00000427639 268 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC098831.1-201ENST00000440661 216 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC125238.1-201ENST00000448842 249 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 SNRPGP3-201ENST00000469405 227 ntBASIC3.88□□□□□ -1.79
TRIM39Q9HCM9 AC068781.1-201ENST00000488231 618 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms