Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC011005.2-201ENST00000487324 359 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 AC114781.4-201ENST00000513707 639 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 RNU6-759P-201ENST00000516740 103 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 AP003181.2-201ENST00000528941 181 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 MIR4529-201ENST00000578110 78 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 BNIP3P8-201ENST00000597863 560 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 AC021646.1-201ENST00000605469 484 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 RNU6-179P-201ENST00000363350 107 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 SNORD14B-201ENST00000364533 90 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AL365203.2-201ENST00000423444 196 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AC011816.1-201ENST00000441346 546 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 MIR4635-201ENST00000583759 79 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 BNIP3P30-201ENST00000601184 574 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AF246928.1-201ENST00000623768 87 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 AC012640.5-201ENST00000623897 319 ntBASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
CHMP4AQ9BY43 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 RNU1-91P-201ENST00000364746 163 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 SNORA20.2-201ENST00000383922 131 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AL355497.1-201ENST00000406262 551 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 RNU2-52P-201ENST00000410680 190 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AL592148.1-201ENST00000413568 445 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 TAF9P1-201ENST00000445421 515 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC079781.2-201ENST00000446424 169 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 EPS15P1-201ENST00000448836 336 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 TAF9P2-201ENST00000454958 515 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC027673.1-201ENST00000456245 405 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 snoU109.1-201ENST00000459339 135 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC068781.1-201ENST00000488231 618 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC112206.3-201ENST00000514578 389 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AP003072.2-201ENST00000527756 676 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 RPS3AP23-202ENST00000574601 686 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 MIR5092-201ENST00000583139 88 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 HMGN1P30-201ENST00000589286 268 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 Z99289.3-201ENST00000605586 594 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 MIR6852-201ENST00000621699 66 ntBASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.36□□□□□ -1.87
CHMP4AQ9BY43 AC008555.8-201ENST00000623602 2168 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 MTND5P17-201ENST00000418405 1603 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AP000568.1-201ENST00000282964 442 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 MIR27B-201ENST00000385129 97 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 RNA5SP390-201ENST00000410191 113 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 MTCYBP5-201ENST00000423752 1135 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AIMP1P2-201ENST00000425294 312 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AL133217.1-201ENST00000450980 425 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AC022493.1-201ENST00000492984 337 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 RNU6-123P-201ENST00000516163 102 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 Vault.3-201ENST00000516676 95 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 RNU6-826P-201ENST00000516827 104 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 AL360219.1-201ENST00000610230 366 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 MIR6840-201ENST00000611937 71 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 MIR6895-201ENST00000613497 78 ntBASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
CHMP4AQ9BY43 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 SNORD62.1-201ENST00000362541 86 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 RNA5SP68-201ENST00000363885 119 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 RNU6-553P-201ENST00000364047 96 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 MIR10A-201ENST00000385043 110 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 KATNBL1P6-201ENST00000453433 915 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 ART2BP-201ENST00000453501 499 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 SNORA59A-201ENST00000459326 152 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC140059.1-201ENST00000489238 361 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 CBX3P7-201ENST00000532876 502 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC026271.5-201ENST00000577873 130 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 MIR4672-201ENST00000583126 81 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC126118.1-201ENST00000607744 628 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 U4.3-201ENST00000621047 82 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 AL157786.1-207ENST00000627771 695 ntBASIC3.34□□□□□ -1.87
CHMP4AQ9BY43 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms