Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR3124-201ENST00000582636 67 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC080078.2-201ENST00000603766 501 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AL138889.2-201ENST00000603883 242 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC008945.2-201ENST00000606056 604 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AL161431.1-201ENST00000618966 4205 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNU6-1085P-201ENST00000363576 107 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNA5SP139-201ENST00000364340 117 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNU6-1029P-201ENST00000384109 107 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNU6-517P-201ENST00000384362 110 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 Y_RNA.505-201ENST00000384489 102 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNU6-1158P-201ENST00000391167 107 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 SNORA40C-201ENST00000391285 128 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AL451074.5-201ENST00000415894 435 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AL513043.1-201ENST00000439124 535 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC104058.1-201ENST00000448028 297 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNU6-261P-201ENST00000459506 102 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 SRRM1P2-201ENST00000464531 1192 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RPL36AP51-201ENST00000487216 318 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RPS27AP10-201ENST00000496103 208 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RAC1P5-201ENST00000512182 576 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC104136.1-201ENST00000512969 394 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 LRRC34P2-201ENST00000514850 553 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RNU4-29P-201ENST00000515943 174 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 RN7SKP219-201ENST00000516825 296 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 MIR3945-201ENST00000581853 98 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC139792.3-201ENST00000623525 224 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC092608.2-201ENST00000624427 218 ntBASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC3Q9BQI4 AC099654.7-201ENST00000635788 2127 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC092593.1-201ENST00000515413 1815 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 MTND4P35-201ENST00000604257 1375 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 MIR26A1-201ENST00000362205 77 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 Y_RNA.6-201ENST00000362350 114 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 RNU1-105P-201ENST00000363470 161 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 RNU6-550P-201ENST00000391057 101 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 RNU6-192P-201ENST00000391253 100 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 CISD1P1-201ENST00000393907 327 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 CALM2P3-201ENST00000400429 449 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 RNA5SP508-201ENST00000411327 119 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 RNA5SP492-201ENST00000411330 114 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 EEF1A1P40-201ENST00000412883 573 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 RNU7-63P-201ENST00000459054 62 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 TRBV1-201ENST00000476502 284 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AL163973.1-201ENST00000484753 577 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 Y_RNA.693-201ENST00000516641 110 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC022634.1-201ENST00000520765 532 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC008536.2-201ENST00000607284 349 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC090115.4-201ENST00000609970 188 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC068792.1-201ENST00000621354 417 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC024940.5-201ENST00000622889 474 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC110079.1-202ENST00000635213 138 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC008264.2-201ENST00000610193 3731 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 AC006020.1-201ENST00000420179 1854 ntBASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC3Q9BQI4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC3Q9BQI4 MIR412-201ENST00000362142 91 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RNU6-1287P-201ENST00000362914 107 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RNU6-996P-201ENST00000365438 107 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RNU6-1060P-201ENST00000384664 107 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 MIR181A2-201ENST00000384863 110 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RPL21P75-201ENST00000396599 483 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RPL21P28-201ENST00000401418 483 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AL592114.1-201ENST00000403842 483 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RNU2-9P-201ENST00000410194 145 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RNU6-1025P-201ENST00000410629 104 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 OOSP1P1-201ENST00000423265 274 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RPL21P39-201ENST00000463605 483 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC128713.1-201ENST00000471495 306 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RPL21P93-201ENST00000480465 489 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC233702.1-201ENST00000482905 502 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC087190.1-201ENST00000484462 480 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC093591.1-201ENST00000491435 481 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC139453.3-201ENST00000493276 369 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RPL21P16-201ENST00000495531 483 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC092436.1-201ENST00000506450 503 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC009646.1-201ENST00000510455 318 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms