Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU4-45P-201ENST00000365469 141 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 RPL26P26-201ENST00000480251 434 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC010469.2-201ENST00000496412 480 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 MIR8064-201ENST00000612863 90 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 Y_RNA.498-201ENST00000384460 102 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 AL590365.1-201ENST00000450788 243 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 RNA5SP404-201ENST00000517118 132 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 AC090116.1-201ENST00000615679 446 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 TPTE2P4-201ENST00000258589 1605 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 RNU6-1077P-201ENST00000410506 102 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 CFTRP2-201ENST00000634304 199 ntBASIC-0.19□□□□□ -2.44
VPS13AQ96RL7 RNU6-920P-201ENST00000410926 92 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AC006512.1-201ENST00000468816 291 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AL136520.1-202ENST00000555494 763 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 MIR3690-201ENST00000580266 75 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AC008739.2-201ENST00000597006 317 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AP000943.4-201ENST00000622912 357 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 RNU6V-201ENST00000384105 107 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AC091874.1-201ENST00000511402 339 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 U1.36-201ENST00000620684 176 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 AC073308.1-201ENST00000623696 305 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 PRELID3BP11-201ENST00000414230 479 ntBASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC-0.2□□□□□ -2.44
VPS13AQ96RL7 RNA5SP496-201ENST00000391240 109 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AC090625.1-201ENST00000357130 210 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 RNA5SP214-201ENST00000363378 118 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AL133373.1-201ENST00000497098 94 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 TRBVA-201ENST00000498804 316 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 RNU1-61P-201ENST00000516107 151 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC-0.21□□□□□ -2.44
VPS13AQ96RL7 AL079343.1-201ENST00000572358 1771 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 RNU4-63P-201ENST00000411313 118 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 AC090142.3-201ENST00000519012 385 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 MIR4290-201ENST00000583807 95 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 AC025594.3-201ENST00000613068 790 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 AC110079.1-202ENST00000635213 138 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 RNU6-575P-201ENST00000411326 105 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 MIR4512-201ENST00000583257 77 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 AP002791.1-201ENST00000623291 381 ntBASIC-0.22□□□□□ -2.44
VPS13AQ96RL7 RNU6-335P-201ENST00000364563 113 ntBASIC-0.22□□□□□ -2.45
VPS13AQ96RL7 AC114982.1-201ENST00000469402 321 ntBASIC-0.22□□□□□ -2.45
VPS13AQ96RL7 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC-0.22□□□□□ -2.45
VPS13AQ96RL7 AC040174.2-201ENST00000602701 465 ntBASIC-0.22□□□□□ -2.45
VPS13AQ96RL7 AC008147.4-201ENST00000617570 1204 ntBASIC-0.22□□□□□ -2.45
VPS13AQ96RL7 AL159152.1-201ENST00000635019 2587 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 RPS26P5-201ENST00000418544 335 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 RNU7-26P-201ENST00000458980 63 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 AP000797.1-201ENST00000478870 387 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 AP001025.1-201ENST00000486139 332 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 LARP1BP2-201ENST00000486594 519 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 MIR608-201ENST00000384820 100 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 RNA5SP222-201ENST00000411039 105 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 PTGES3P4-201ENST00000426243 356 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 HSPE1P13-201ENST00000451143 297 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 MTATP6P7-201ENST00000453315 681 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 SNORA48.10-201ENST00000516965 160 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 MIR4422-201ENST00000581938 83 ntBASIC-0.23□□□□□ -2.45
VPS13AQ96RL7 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC008121.1-201ENST00000603244 268 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC007363.1-201ENST00000604736 620 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC091304.9-201ENST00000612091 226 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC108740.1-201ENST00000498629 225 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 HMGN2P21-201ENST00000447764 270 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC090888.2-201ENST00000559765 1144 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 AC106900.2-201ENST00000604994 317 ntBASIC-0.24□□□□□ -2.45
VPS13AQ96RL7 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC-0.25□□□□□ -2.45
VPS13AQ96RL7 SNORA51.2-201ENST00000364595 132 ntBASIC-0.25□□□□□ -2.45
VPS13AQ96RL7 TPMTP4-201ENST00000450749 678 ntBASIC-0.25□□□□□ -2.45
VPS13AQ96RL7 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.25□□□□□ -2.45
VPS13AQ96RL7 CENPUP1-201ENST00000526649 1202 ntBASIC-0.25□□□□□ -2.45
VPS13AQ96RL7 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC-0.25□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms