Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC005771.1-201ENST00000585581 349 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 Z94722.1-201ENST00000604328 474 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 MIR6840-201ENST00000611937 71 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC008250.2-201ENST00000615261 205 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 MIR6817-201ENST00000615588 66 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 AC009090.3-201ENST00000616553 565 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 MIR5739-201ENST00000619803 80 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 SCARNA15.3-201ENST00000626315 122 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 SCARNA4.1-201ENST00000628597 123 ntBASIC2.36□□□□□ -2.03
VPS39Q96JC1 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS39Q96JC1 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS39Q96JC1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VPS39Q96JC1 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS39Q96JC1 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VPS39Q96JC1 RNA5SP68-201ENST00000363885 119 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 SNORA80E-201ENST00000384744 137 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 RNY3P10-201ENST00000384764 102 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 RPS4XP8-201ENST00000402039 771 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 MRPL42P2-201ENST00000403169 426 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 HMGN1P14-201ENST00000412459 517 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 OR51A5P-201ENST00000415429 942 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 ISCA1P6-201ENST00000427740 390 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC119618.1-201ENST00000434191 222 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 RPS15AP9-201ENST00000439856 381 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 MTND2P4-201ENST00000445034 1004 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 MTND1P12-201ENST00000455231 147 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS39Q96JC1 CKS1BP2-201ENST00000497342 240 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC026436.1-201ENST00000510537 270 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS39Q96JC1 RNU6-1092P-201ENST00000516955 87 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 ACA59.2-201ENST00000517061 156 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC022616.3-201ENST00000523940 148 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 CYCSP26-201ENST00000534107 320 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS39Q96JC1 MIR3162-201ENST00000581818 82 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AL359999.1-201ENST00000604513 294 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC103810.6-201ENST00000606708 136 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC098614.4-201ENST00000607601 462 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC009233.1-201ENST00000616477 371 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC110994.2-201ENST00000635481 492 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 MIR3974-201ENST00000637126 96 ntBASIC2.35□□□□□ -2.03
VPS39Q96JC1 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS39Q96JC1 AC131280.1-202ENST00000624067 4211 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.34□□□□□ -2.03
VPS39Q96JC1 RNA5SP240-201ENST00000365355 128 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 SNORA4.3-201ENST00000365564 137 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 RNU6-946P-201ENST00000383878 107 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 RPS12P24-201ENST00000412619 387 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS39Q96JC1 USP9YP15-201ENST00000442391 422 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 GAPDHP17-201ENST00000449858 1001 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS39Q96JC1 AC010486.3-201ENST00000511602 785 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AC021269.2-201ENST00000532318 330 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 LINC00933-203ENST00000559812 219 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.6-201ENST00000603753 252 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AC006023.1-201ENST00000603944 259 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.11-201ENST00000604059 253 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AC008162.1-201ENST00000604718 254 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.1-201ENST00000604752 252 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL355297.2-201ENST00000604792 129 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.5-201ENST00000605253 252 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.12-201ENST00000605291 253 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.8-201ENST00000605353 252 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL670379.7-201ENST00000605823 252 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AL451064.1-201ENST00000607718 471 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS39Q96JC1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.34□□□□□ -2.03
VPS39Q96JC1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
VPS39Q96JC1 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.34□□□□□ -2.04
VPS39Q96JC1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.34□□□□□ -2.04
VPS39Q96JC1 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 MIRLET7G-201ENST00000362280 84 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 SNORA16B-201ENST00000364674 135 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 Z98749.2-208ENST00000381646 500 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 RPL23AP32-201ENST00000395315 459 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 U3.37-201ENST00000408528 213 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 RN7SKP142-201ENST00000411236 328 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC127391.1-201ENST00000411737 98 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 AL353621.1-201ENST00000418219 243 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 ELOCP4-201ENST00000420090 333 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC090960.1-201ENST00000421072 306 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
VPS39Q96JC1 CYP2C59P-201ENST00000457790 269 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC090515.1-201ENST00000465295 476 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms