Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RPS29P13-201ENST00000402041 169 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AL030996.1-201ENST00000411430 235 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 TMSB10P2-201ENST00000416049 131 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC006989.1-201ENST00000427212 131 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AL591043.1-201ENST00000432461 424 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC244505.4-201ENST00000434905 287 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 SSXP5-201ENST00000443473 287 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC124916.1-201ENST00000444020 547 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RPS3AP46-201ENST00000448352 682 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC012308.1-201ENST00000451232 178 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 RNU7-187P-201ENST00000458985 68 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC107626.1-201ENST00000471084 183 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC018437.1-201ENST00000492214 406 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC116337.1-201ENST00000509680 687 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC090877.1-201ENST00000561418 344 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 VN1R107P-201ENST00000601784 209 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC016727.1-205ENST00000605437 569 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AL161423.1-201ENST00000613700 262 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 MIR6128-201ENST00000615528 109 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC110079.1-202ENST00000635213 138 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 MIR3529-201ENST00000637713 78 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 AC103988.1-201ENST00000566382 2177 ntBASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CCDC28AQ8IWP9 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 MTND4P23-201ENST00000447723 1363 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 MTND4P29-201ENST00000503122 1372 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 SNORD56.3-201ENST00000363507 71 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-1027P-201ENST00000383998 107 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.482-201ENST00000384377 111 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-933P-201ENST00000384424 107 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-748P-201ENST00000384648 107 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC093578.1-201ENST00000415219 368 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AL358472.1-201ENST00000431295 329 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 HMGN1P18-201ENST00000457642 277 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 U8.21-201ENST00000459536 136 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC109327.1-201ENST00000471666 403 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 RPS29P22-201ENST00000472363 168 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC093840.1-201ENST00000511599 336 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 RNU5F-8P-201ENST00000515941 111 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-1016P-201ENST00000516689 94 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC007536.1-201ENST00000533382 349 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC093027.1-201ENST00000546698 429 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 MIR4795-201ENST00000584182 89 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC005046.1-201ENST00000608515 625 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AL591516.1-201ENST00000611326 274 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 AC138627.2-201ENST00000624202 601 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 HAUS6P2-201ENST00000433254 2404 ntBASIC3.13□□□□□ -1.91
CCDC28AQ8IWP9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-398P-201ENST00000384143 109 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-601P-201ENST00000384540 107 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 MIR887-201ENST00000401258 79 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RNA5SP344-201ENST00000411081 104 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-325P-201ENST00000411132 105 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 BMS1P22-201ENST00000414726 313 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 ATG3P1-201ENST00000419507 911 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC245028.1-201ENST00000423259 256 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 DNAJC19P7-201ENST00000428811 344 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 PCMTD1P1-201ENST00000455560 355 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AL441985.1-201ENST00000457727 251 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RN7SL98P-201ENST00000462271 300 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC133134.1-201ENST00000466800 359 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-559P-201ENST00000516151 98 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms