Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
UBE3DQ7Z6J8 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.15□□□□□ -1.74
UBE3DQ7Z6J8 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 RNA5SP447-201ENST00000363749 119 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 U3.22-201ENST00000391120 215 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 HDGFP1-201ENST00000405943 252 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 MIR1911-201ENST00000410783 80 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 RPL37P18-201ENST00000411602 243 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 ELOCP19-201ENST00000411919 318 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 AL390729.2-201ENST00000416137 156 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 RPL35AP15-201ENST00000468042 339 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 AF186190.1-201ENST00000517470 480 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 IGLV3-26-201ENST00000520756 302 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 MIR4643-201ENST00000577473 78 ntBASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
UBE3DQ7Z6J8 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 MARK2P15-201ENST00000432204 2186 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AC018529.3-201ENST00000624212 2254 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-527P-201ENST00000363425 104 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-843P-201ENST00000384454 104 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-102P-201ENST00000384485 104 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 SNORD66.1-201ENST00000391230 76 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 SNORA11F-201ENST00000408237 128 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AC017079.2-201ENST00000416102 485 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AC005002.2-201ENST00000438228 269 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 CYCSP32-201ENST00000440548 321 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 snoU109.2-201ENST00000459316 135 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 RNU2-31P-201ENST00000516954 155 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 LINC00933-203ENST00000559812 219 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 CYCSP39-201ENST00000565821 309 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AL021997.2-201ENST00000615674 271 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 AL138721.1-201ENST00000616756 179 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.14□□□□□ -1.75
UBE3DQ7Z6J8 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-142P-201ENST00000384019 107 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 RPS4XP3-201ENST00000398541 413 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 SNORA11B-201ENST00000408175 129 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 RPL26P27-201ENST00000414397 437 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 MTATP6P29-201ENST00000415057 132 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 TOMM22P1-201ENST00000418578 312 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AC245028.1-201ENST00000423259 256 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 RPL23AP52-201ENST00000439311 478 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 ABCF2P2-201ENST00000450549 296 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 RN7SL98P-201ENST00000462271 300 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 RN7SL812P-201ENST00000493791 279 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AC090281.1-201ENST00000523019 276 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 TRAV8-5-201ENST00000537369 341 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 MIR4423-201ENST00000580922 80 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AL162424.1-201ENST00000602325 221 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AC113403.1-201ENST00000604910 193 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AC072026.1-201ENST00000605023 201 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 uc_338.13-201ENST00000618243 179 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 AC241585.2-209ENST00000638217 143 ntBASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
UBE3DQ7Z6J8 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-222P-201ENST00000362438 107 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 U3.15-201ENST00000365398 212 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms