Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC092809.3-201ENST00000415453 231 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC097713.2-201ENST00000430199 356 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AL645568.3-201ENST00000433683 316 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AL356535.1-201ENST00000440335 398 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.86□□□□□ -1.79
USP39Q53GS9 RANP8-201ENST00000444720 713 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AL162389.1-201ENST00000449233 177 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 FABP5P13-201ENST00000452144 328 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.86□□□□□ -1.79
USP39Q53GS9 AC008481.1-201ENST00000463278 396 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 RPL23AP62-201ENST00000463396 453 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 HMGB1P25-201ENST00000468402 607 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 RPL32P34-201ENST00000486380 400 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC069499.1-201ENST00000489433 509 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC105758.1-201ENST00000506038 399 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.86□□□□□ -1.79
USP39Q53GS9 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.86□□□□□ -1.79
USP39Q53GS9 RNU6-307P-201ENST00000516743 106 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 IGKV2D-36-201ENST00000518643 226 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC087369.1-201ENST00000520775 996 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC022695.1-201ENST00000522089 237 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.86□□□□□ -1.79
USP39Q53GS9 AL360157.1-201ENST00000565962 87 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 MIR5195-201ENST00000583555 115 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.86□□□□□ -1.79
USP39Q53GS9 AC110741.2-201ENST00000605278 268 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AL158032.1-201ENST00000605401 106 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 MIR7975-201ENST00000619350 68 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 AC110801.1-201ENST00000623590 212 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 U2.22-201ENST00000636441 106 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USP39Q53GS9 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USP39Q53GS9 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USP39Q53GS9 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP39Q53GS9 MAPK10-373ENST00000641983 6772 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP39Q53GS9 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP39Q53GS9 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
USP39Q53GS9 AC138393.1-203ENST00000327086 343 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 RNU6-335P-201ENST00000364563 113 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 SNORD14.1-201ENST00000365609 90 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 RNU6-339P-201ENST00000384310 107 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 Y_RNA.562-201ENST00000384695 113 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
USP39Q53GS9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
USP39Q53GS9 RNU4-65P-201ENST00000410473 140 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 RNA5SP111-201ENST00000411386 101 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 ELOCP20-201ENST00000422460 345 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AL391219.1-201ENST00000422570 483 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AL591704.1-201ENST00000432574 275 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.85□□□□□ -1.79
USP39Q53GS9 AC084198.1-201ENST00000477747 402 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 AC022447.4-201ENST00000504053 364 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.85□□□□□ -1.79
USP39Q53GS9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 RNU6-1023P-201ENST00000516137 106 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 Y_RNA.689-201ENST00000516589 107 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AP006587.4-201ENST00000526053 529 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.85□□□□□ -1.79
USP39Q53GS9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 MIR5188-201ENST00000583467 113 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.85□□□□□ -1.79
USP39Q53GS9 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.85□□□□□ -1.79
USP39Q53GS9 AC137590.2-201ENST00000619709 240 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 AC007998.5-201ENST00000622938 237 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
USP39Q53GS9 IPO8P1-201ENST00000455509 3109 ntBASIC3.85□□□□□ -1.79
USP39Q53GS9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.85□□□□□ -1.79
USP39Q53GS9 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
USP39Q53GS9 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
USP39Q53GS9 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.84□□□□□ -1.79
USP39Q53GS9 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.84□□□□□ -1.79
USP39Q53GS9 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP39Q53GS9 Y_RNA.14-201ENST00000362415 103 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 Y_RNA.276-201ENST00000364732 109 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 RNU6-806P-201ENST00000365147 105 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 Y_RNA.376-201ENST00000365638 108 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 RNU6-214P-201ENST00000384130 107 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 RNU6-14P-201ENST00000384630 106 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 RNU6-713P-201ENST00000384761 107 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.84□□□□□ -1.79
USP39Q53GS9 AP000907.1-201ENST00000428428 510 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 RPL23AP50-201ENST00000434149 455 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AL590664.1-201ENST00000448065 339 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 RPS3AP46-201ENST00000448352 682 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.84□□□□□ -1.79
USP39Q53GS9 snoU109.4-201ENST00000458953 143 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 SNORA40.14-201ENST00000516543 86 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 IGHV3-76-201ENST00000522465 295 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.84□□□□□ -1.79
USP39Q53GS9 CR383656.7-201ENST00000548164 174 ntBASIC3.84□□□□□ -1.79
USP39Q53GS9 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.84□□□□□ -1.79
USP39Q53GS9 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.84□□□□□ -1.79
USP39Q53GS9 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.84□□□□□ -1.79
USP39Q53GS9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.84□□□□□ -1.79
USP39Q53GS9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 156.9 ms