Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.43□□□□□ -1.7
SOX4Q06945 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
SOX4Q06945 RNU1-15P-201ENST00000353977 144 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 Y_RNA.122-201ENST00000363331 96 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 SNORD78.2-201ENST00000391076 69 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 RNU6-628P-201ENST00000410675 107 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 Y_RNA.626-201ENST00000411288 95 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 HSPE1P12-201ENST00000412576 301 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.43□□□□□ -1.7
SOX4Q06945 TBCAP1-201ENST00000436520 327 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 FABP5P15-201ENST00000453566 214 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 AC134698.5-201ENST00000519444 336 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.43□□□□□ -1.7
SOX4Q06945 SNORD84-203ENST00000584275 78 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 Z83818.1-201ENST00000603584 150 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 MZT1P2-201ENST00000604387 248 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 MIR6875-201ENST00000617506 72 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 AC021753.1-201ENST00000635724 168 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 AC139713.2-215ENST00000641428 5037 ntBASIC4.43□□□□□ -1.7
SOX4Q06945 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SOX4Q06945 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SOX4Q06945 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.43□□□□□ -1.7
SOX4Q06945 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.42□□□□□ -1.7
SOX4Q06945 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX4Q06945 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX4Q06945 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
SOX4Q06945 Z73965.1-201ENST00000623412 2297 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX4Q06945 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.42□□□□□ -1.7
SOX4Q06945 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.42□□□□□ -1.7
SOX4Q06945 RNA5SP388-201ENST00000362584 119 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 Y_RNA.44-201ENST00000362676 108 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 RNU4-90P-201ENST00000362773 141 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.42□□□□□ -1.7
SOX4Q06945 MIR134-201ENST00000385258 73 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.42□□□□□ -1.7
SOX4Q06945 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC4.42□□□□□ -1.7
SOX4Q06945 HSPE1P25-201ENST00000455484 251 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 RNU6-377P-201ENST00000515965 102 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 AP006245.1-201ENST00000522549 120 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 AC090617.3-201ENST00000573670 475 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 AL645944.1-201ENST00000603857 493 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 AL359854.1-201ENST00000614203 1594 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
SOX4Q06945 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.42□□□□□ -1.7
SOX4Q06945 AC010300.1-201ENST00000600671 5134 ntBASIC4.42□□□□□ -1.7
SOX4Q06945 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
SOX4Q06945 AC116096.1-201ENST00000566804 2314 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX4Q06945 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX4Q06945 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX4Q06945 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 AC090740.1-201ENST00000623193 2262 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 RNU6-1301P-201ENST00000362724 104 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 RNA5SP513-201ENST00000364648 118 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 RNY4P28-201ENST00000365281 93 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 RNU6-356P-201ENST00000384140 107 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 RNA5SP372-201ENST00000390836 115 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX4Q06945 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX4Q06945 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX4Q06945 TOMM22P6-201ENST00000465035 409 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 RPS29P26-201ENST00000477483 171 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX4Q06945 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.41□□□□□ -1.7
SOX4Q06945 MIR5684-201ENST00000585074 65 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 AC060766.3-201ENST00000591442 263 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 BRDTP1-201ENST00000605735 677 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.41□□□□□ -1.7
SOX4Q06945 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX4Q06945 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX4Q06945 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
SOX4Q06945 AC092435.4-201ENST00000623012 4159 ntBASIC4.4□□□□□ -1.7
SOX4Q06945 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.4□□□□□ -1.7
SOX4Q06945 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.4□□□□□ -1.7
SOX4Q06945 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.4□□□□□ -1.7
SOX4Q06945 RNU6-858P-201ENST00000362436 107 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 Y_RNA.170-201ENST00000363746 110 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 SNORD63-201ENST00000384262 68 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 RPS6P12-201ENST00000432491 726 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 COX6CP14-201ENST00000469580 174 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 RPS26P21-201ENST00000475397 348 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 AC109925.1-201ENST00000478069 331 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX4Q06945 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.4□□□□□ -1.71
SOX4Q06945 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.4□□□□□ -1.71
SOX4Q06945 FAM60BP-201ENST00000578364 658 ntBASIC4.4□□□□□ -1.71
SOX4Q06945 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.4□□□□□ -1.71
SOX4Q06945 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SOX4Q06945 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
SOX4Q06945 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms