Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AP001025.1-201ENST00000486139 332 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 HMGB1P22-201ENST00000505315 124 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 UBL5P1-201ENST00000507979 193 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 RNU7-193P-201ENST00000516723 65 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC005668.1-201ENST00000571142 476 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC092474.3-201ENST00000603022 568 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC004908.3-201ENST00000610248 625 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC104763.3-201ENST00000613765 618 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC009318.4-201ENST00000620496 486 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 UCA1.1-201ENST00000620952 75 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.26□□□□□ -2.37
COL7A1Q02388 MIR7157-201ENST00000635801 60 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC016716.1-201ENST00000265882 708 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 RNY4P7-201ENST00000364600 96 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 SNORA8-201ENST00000384574 139 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 Y_RNA.568-201ENST00000384742 113 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 BTF3L4P2-201ENST00000392798 346 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 RNU2-49P-201ENST00000410666 184 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.25□□□□□ -2.37
COL7A1Q02388 RPP40P1-201ENST00000426762 456 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.25□□□□□ -2.37
COL7A1Q02388 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
COL7A1Q02388 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.25□□□□□ -2.37
COL7A1Q02388 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 RNU6-27P-201ENST00000516146 107 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 SNORD116-30-201ENST00000516468 85 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 AC010186.2-204ENST00000537668 439 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 AL133241.1-201ENST00000556832 487 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 MIR3921-201ENST00000577308 85 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AL021997.1-201ENST00000605757 193 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC011939.3-201ENST00000613686 466 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC087821.2-201ENST00000637086 450 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AL513185.3-201ENST00000433335 1300 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.25□□□□□ -2.37
COL7A1Q02388 Y_RNA.55-201ENST00000362797 102 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 Y_RNA.493-201ENST00000384422 102 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 RNU6-821P-201ENST00000390995 107 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 RNA5SP212-201ENST00000391223 107 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.25□□□□□ -2.37
COL7A1Q02388 AC016717.1-201ENST00000448918 286 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 OR52A4P-202ENST00000481634 799 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC0.25□□□□□ -2.37
COL7A1Q02388 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
COL7A1Q02388 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 MIR548AX-201ENST00000580117 73 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 MIR4765-201ENST00000585007 77 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC025588.2-201ENST00000604851 466 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC012676.2-201ENST00000619258 186 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AL121890.5-201ENST00000620848 304 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC0.25□□□□□ -2.37
COL7A1Q02388 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.25□□□□□ -2.37
COL7A1Q02388 MTND5P30-201ENST00000452896 1731 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 LINC02555-201ENST00000563933 1951 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU6-167P-201ENST00000384292 106 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU6-233P-201ENST00000410845 141 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU4-78P-201ENST00000410940 126 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 snoU13.4-201ENST00000458916 104 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 VPS26AP1-201ENST00000483197 979 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
COL7A1Q02388 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC138853.1-201ENST00000503549 823 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 HMGB1P14-201ENST00000557424 591 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AP001269.3-201ENST00000588718 329 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AC004987.4-201ENST00000603383 338 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL137246.1-201ENST00000607072 977 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL589743.7-201ENST00000612637 233 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AL773524.1-201ENST00000614065 229 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 FRG1HP-204ENST00000617940 757 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AL360181.4-201ENST00000621752 134 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 AP002791.1-201ENST00000623291 381 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU6-1155P-201ENST00000363554 107 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RNU6-748P-201ENST00000384648 107 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 MIR618-201ENST00000385287 98 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RPS3AP36-201ENST00000398190 775 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.24□□□□□ -2.37
COL7A1Q02388 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC0.24□□□□□ -2.37
COL7A1Q02388 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC0.24□□□□□ -2.37
COL7A1Q02388 AL121578.1-201ENST00000428051 892 ntBASIC0.24□□□□□ -2.37
COL7A1Q02388 RSU1P2-202ENST00000437884 485 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms