Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RNU1-13P-201ENST00000384499 162 ntBASIC3.09□□□□□ -1.91
SOX2P48431 MIR141-201ENST00000384975 95 ntBASIC3.09□□□□□ -1.91
SOX2P48431 MIR888-201ENST00000401186 77 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX2P48431 AL353729.1-201ENST00000425044 720 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX2P48431 AL357552.1-201ENST00000445254 415 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RPL37P4-201ENST00000448908 268 ntBASIC3.09□□□□□ -1.91
SOX2P48431 MTATP6P7-201ENST00000453315 681 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AC006539.3-201ENST00000454258 129 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RPL30P15-201ENST00000457129 321 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RPS4XP2-201ENST00000458402 793 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RNU7-187P-201ENST00000458985 68 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RPL23AP14-201ENST00000468281 468 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AC027575.1-201ENST00000481064 460 ntBASIC3.09□□□□□ -1.91
SOX2P48431 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX2P48431 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX2P48431 AC006445.2-201ENST00000510061 472 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AC005741.1-201ENST00000511094 432 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RN7SKP122-201ENST00000515923 296 ntBASIC3.09□□□□□ -1.91
SOX2P48431 Y_RNA.708-201ENST00000516950 96 ntBASIC3.09□□□□□ -1.91
SOX2P48431 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.09□□□□□ -1.91
SOX2P48431 AC008121.1-201ENST00000603244 268 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AC124303.1-201ENST00000605703 360 ntBASIC3.09□□□□□ -1.91
SOX2P48431 MIR378J-201ENST00000611988 109 ntBASIC3.09□□□□□ -1.91
SOX2P48431 AL157817.1-201ENST00000614264 790 ntBASIC3.09□□□□□ -1.91
SOX2P48431 MIR6875-201ENST00000617506 72 ntBASIC3.09□□□□□ -1.91
SOX2P48431 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
SOX2P48431 AC093908.1-201ENST00000623125 8092 ntBASIC3.09□□□□□ -1.91
SOX2P48431 SNORA50A-202ENST00000629536 136 ntBASIC3.09□□□□□ -1.91
SOX2P48431 U2.21-201ENST00000637295 81 ntBASIC3.09□□□□□ -1.91
SOX2P48431 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SOX2P48431 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
SOX2P48431 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.09□□□□□ -1.92
SOX2P48431 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SOX2P48431 KPNA2P1-201ENST00000458289 1591 ntBASIC3.08□□□□□ -1.92
SOX2P48431 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.08□□□□□ -1.92
SOX2P48431 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX2P48431 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX2P48431 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 AC002546.1-201ENST00000588041 2504 ntBASIC3.08□□□□□ -1.92
SOX2P48431 Y_RNA.138-201ENST00000363462 102 ntBASIC3.08□□□□□ -1.92
SOX2P48431 RNU6-884P-201ENST00000363889 107 ntBASIC3.08□□□□□ -1.92
SOX2P48431 Y_RNA.187-201ENST00000363918 113 ntBASIC3.08□□□□□ -1.92
SOX2P48431 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
SOX2P48431 RNU6-658P-201ENST00000384606 106 ntBASIC3.08□□□□□ -1.92
SOX2P48431 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX2P48431 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 AC093151.1-201ENST00000427711 313 ntBASIC3.08□□□□□ -1.92
SOX2P48431 C4BPAP2-201ENST00000428434 478 ntBASIC3.08□□□□□ -1.92
SOX2P48431 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.08□□□□□ -1.92
SOX2P48431 SNRPEP4-201ENST00000435815 279 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX2P48431 AL031274.1-201ENST00000450334 232 ntBASIC3.08□□□□□ -1.92
SOX2P48431 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.08□□□□□ -1.92
SOX2P48431 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.08□□□□□ -1.92
SOX2P48431 SNORA70.19-201ENST00000516717 90 ntBASIC3.08□□□□□ -1.92
SOX2P48431 RNU6-928P-201ENST00000516876 104 ntBASIC3.08□□□□□ -1.92
SOX2P48431 MIR2276-201ENST00000516886 89 ntBASIC3.08□□□□□ -1.92
SOX2P48431 H3F3AP1-201ENST00000559984 334 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AMZ2P1-203ENST00000565833 850 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX2P48431 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX2P48431 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX2P48431 CYP2C61P-201ENST00000604072 290 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AL160281.1-201ENST00000605307 311 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AC018462.2-201ENST00000605375 395 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AC019193.3-201ENST00000609144 554 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AC002076.2-201ENST00000617362 122 ntBASIC3.08□□□□□ -1.92
SOX2P48431 MIR6076-201ENST00000617521 113 ntBASIC3.08□□□□□ -1.92
SOX2P48431 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX2P48431 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AL354798.1-201ENST00000622505 329 ntBASIC3.08□□□□□ -1.92
SOX2P48431 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 AL669831.3-213ENST00000636676 183 ntBASIC3.08□□□□□ -1.92
SOX2P48431 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX2P48431 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX2P48431 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX2P48431 AL513302.2-201ENST00000562313 1842 ntBASIC3.07□□□□□ -1.92
SOX2P48431 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX2P48431 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX2P48431 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX2P48431 RNU6-778P-201ENST00000363269 103 ntBASIC3.07□□□□□ -1.92
SOX2P48431 RNU1-73P-201ENST00000383971 164 ntBASIC3.07□□□□□ -1.92
SOX2P48431 RNU6-306P-201ENST00000384617 107 ntBASIC3.07□□□□□ -1.92
SOX2P48431 SNORA75.4-201ENST00000391278 119 ntBASIC3.07□□□□□ -1.92
SOX2P48431 RPL5P18-201ENST00000406671 891 ntBASIC3.07□□□□□ -1.92
SOX2P48431 RNU6-1050P-201ENST00000410388 107 ntBASIC3.07□□□□□ -1.92
SOX2P48431 SNORD56-201ENST00000413522 71 ntBASIC3.07□□□□□ -1.92
SOX2P48431 Z99755.1-201ENST00000414048 380 ntBASIC3.07□□□□□ -1.92
SOX2P48431 RPL31P12-201ENST00000422587 358 ntBASIC3.07□□□□□ -1.92
SOX2P48431 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.07□□□□□ -1.92
SOX2P48431 AC097713.2-201ENST00000430199 356 ntBASIC3.07□□□□□ -1.92
SOX2P48431 AC007389.2-201ENST00000434630 306 ntBASIC3.07□□□□□ -1.92
SOX2P48431 OR4C10P-201ENST00000434991 931 ntBASIC3.07□□□□□ -1.92
SOX2P48431 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX2P48431 AL590664.1-201ENST00000448065 339 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms