Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU5F-3P-201ENST00000363767 117 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 RNU4-10P-201ENST00000364383 140 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 Y_RNA.280-201ENST00000364765 112 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 RNU6-1310P-201ENST00000384153 107 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 Y_RNA.521-201ENST00000384560 114 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 RNU6-882P-201ENST00000391025 103 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 MIR888-201ENST00000401186 77 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 AC138623.1-201ENST00000418060 216 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.34□□□□□ -1.71
COL8A1P27658 AL358075.3-201ENST00000426289 226 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.34□□□□□ -1.71
COL8A1P27658 AL714022.1-201ENST00000439897 151 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 LINC02210-201ENST00000444561 288 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 AL589765.3-201ENST00000446084 462 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 FABP5P15-201ENST00000453566 214 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 SNORD125-201ENST00000459538 96 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 Y_RNA.685-201ENST00000516532 108 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.34□□□□□ -1.71
COL8A1P27658 MIR3138-201ENST00000585238 82 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 AC244107.2-201ENST00000611773 76 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 uc_338.28-201ENST00000612082 187 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 AC025521.1-201ENST00000621624 286 ntBASIC4.34□□□□□ -1.71
COL8A1P27658 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL8A1P27658 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL8A1P27658 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL8A1P27658 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.34□□□□□ -1.72
COL8A1P27658 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
COL8A1P27658 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.34□□□□□ -1.72
COL8A1P27658 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.34□□□□□ -1.72
COL8A1P27658 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL8A1P27658 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL8A1P27658 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
COL8A1P27658 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 SAGE2P-201ENST00000420011 2126 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.33□□□□□ -1.72
COL8A1P27658 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 Y_RNA.24-201ENST00000362508 103 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 RNU6-801P-201ENST00000364087 105 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 SNORD113.2-201ENST00000364166 89 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 Y_RNA.293-201ENST00000364908 93 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 Y_RNA.329-201ENST00000365209 107 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 RNU6-142P-201ENST00000384019 107 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 AL591034.1-201ENST00000407447 340 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 MIR1250-201ENST00000408098 113 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 RNA5SP44-201ENST00000410446 133 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 Y_RNA.630-201ENST00000411370 108 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC009963.1-201ENST00000417265 157 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AL158147.1-201ENST00000443970 75 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC4.33□□□□□ -1.72
COL8A1P27658 RN7SL443P-201ENST00000464331 290 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC139453.3-201ENST00000493276 369 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC136628.3-201ENST00000521868 290 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AP001781.1-201ENST00000530977 207 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.33□□□□□ -1.72
COL8A1P27658 AC133485.4-201ENST00000561835 220 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC138907.4-201ENST00000570107 226 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.33□□□□□ -1.72
COL8A1P27658 AC005255.1-201ENST00000593748 216 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC004832.5-201ENST00000608677 401 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC006133.1-201ENST00000617106 264 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AL445567.2-201ENST00000618935 498 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 AC034229.5-201ENST00000624258 185 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.33□□□□□ -1.72
COL8A1P27658 SCARNA4-202ENST00000625402 129 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL8A1P27658 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL8A1P27658 CENPCP1-201ENST00000533085 2578 ntBASIC4.33□□□□□ -1.72
COL8A1P27658 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.33□□□□□ -1.72
COL8A1P27658 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL8A1P27658 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.33□□□□□ -1.72
COL8A1P27658 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL8A1P27658 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL8A1P27658 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.32□□□□□ -1.72
COL8A1P27658 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.32□□□□□ -1.72
COL8A1P27658 AC068700.1-201ENST00000565862 3754 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL8A1P27658 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
COL8A1P27658 FAM91A3P-201ENST00000456826 2544 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
COL8A1P27658 RN7SKP224-201ENST00000364140 325 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 RNA5SP509-201ENST00000364577 119 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 RNU6-166P-201ENST00000384371 107 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 Y_RNA.498-201ENST00000384460 102 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 U3.19-201ENST00000390893 196 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 RNU6-712P-201ENST00000410558 100 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.32□□□□□ -1.72
COL8A1P27658 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.32□□□□□ -1.72
COL8A1P27658 AL354714.3-201ENST00000447284 493 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 EIF4A1P11-201ENST00000451239 222 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.32□□□□□ -1.72
COL8A1P27658 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 RPL23AP56-201ENST00000460778 453 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 RPL31P13-201ENST00000484151 370 ntBASIC4.32□□□□□ -1.72
COL8A1P27658 SNORA67.7-201ENST00000516664 135 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms