Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNORD113-6-201ENST00000363345 75 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RNA5SP62-201ENST00000363457 110 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 Y_RNA.548-201ENST00000384656 105 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL049545.1-201ENST00000401856 572 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 MIR320C1-201ENST00000408566 88 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC083875.1-201ENST00000419509 405 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RPS3AP44-201ENST00000425466 790 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 USP9YP11-201ENST00000427537 717 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC079780.1-201ENST00000428259 207 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL356867.1-201ENST00000429623 299 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.49□□□□□ -2.17
COL5A3P25940 ARPC3P5-201ENST00000448802 534 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC005297.2-201ENST00000450430 606 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.49□□□□□ -2.17
COL5A3P25940 RNU7-125P-201ENST00000458760 62 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 HAR1A.1-201ENST00000459583 118 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
COL5A3P25940 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.49□□□□□ -2.17
COL5A3P25940 AC010587.2-201ENST00000511727 448 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.49□□□□□ -2.17
COL5A3P25940 FABP5P5-201ENST00000515537 406 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC1.49□□□□□ -2.17
COL5A3P25940 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC1.49□□□□□ -2.17
COL5A3P25940 HSBP1P1-201ENST00000555205 166 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC090888.2-201ENST00000559765 1144 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL158211.1-201ENST00000566763 763 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC068135.2-201ENST00000569293 1028 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 MIR3122-201ENST00000577243 73 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC008751.2-201ENST00000597885 980 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC016727.2-201ENST00000603988 621 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 MIR98-201ENST00000606724 119 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC006338.1-201ENST00000618453 749 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC027309.3-201ENST00000623419 351 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.48□□□□□ -2.17
COL5A3P25940 AL391994.1-201ENST00000254724 282 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 RNU6-1155P-201ENST00000363554 107 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
COL5A3P25940 RNA5SP354-201ENST00000391247 136 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC119751.3-201ENST00000399720 670 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 DHFRP6-201ENST00000401776 268 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 VPS26BP1-201ENST00000417155 755 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AL953862.1-201ENST00000423016 168 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 MTND1P20-201ENST00000430341 950 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.48□□□□□ -2.17
COL5A3P25940 AL008629.1-201ENST00000438615 184 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 SDCBPP1-201ENST00000440192 890 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC002381.1-201ENST00000447049 280 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.48□□□□□ -2.17
COL5A3P25940 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.48□□□□□ -2.17
COL5A3P25940 BTF3P12-201ENST00000519620 469 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.48□□□□□ -2.17
COL5A3P25940 ANKRD36BP2-206ENST00000575193 1245 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 7SK.7-201ENST00000603504 247 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AL390208.1-201ENST00000605885 644 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC245297.2-201ENST00000610119 565 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AL449363.1-201ENST00000617815 186 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AP000770.2-201ENST00000623694 100 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 AC087359.1-201ENST00000508335 1740 ntBASIC1.48□□□□□ -2.17
COL5A3P25940 RNU6-1078P-201ENST00000364522 103 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 RNU6-234P-201ENST00000365229 104 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 SNORA46.1-201ENST00000391069 153 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 RNA5SP252-201ENST00000391131 119 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC1.47□□□□□ -2.17
COL5A3P25940 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.47□□□□□ -2.17
COL5A3P25940 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.47□□□□□ -2.17
COL5A3P25940 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.47□□□□□ -2.17
COL5A3P25940 AC007560.1-201ENST00000426912 237 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.47□□□□□ -2.17
COL5A3P25940 PSPHP1-201ENST00000450062 261 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 DYNLL1P5-201ENST00000467158 270 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 RPL31P41-201ENST00000477967 372 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.47□□□□□ -2.17
COL5A3P25940 AC104685.1-201ENST00000502445 371 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC147055.4-201ENST00000504399 745 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC010486.2-201ENST00000505572 483 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
COL5A3P25940 AC022447.3-201ENST00000506865 495 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC024589.1-201ENST00000512207 263 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC105185.1-201ENST00000518705 535 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC023050.2-201ENST00000544968 387 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 ZNF321P-202ENST00000550843 495 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.47□□□□□ -2.17
COL5A3P25940 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.47□□□□□ -2.17
COL5A3P25940 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC1.47□□□□□ -2.17
COL5A3P25940 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC1.47□□□□□ -2.17
COL5A3P25940 AL031274.2-201ENST00000599419 203 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC103710.4-201ENST00000609301 899 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AL607023.1-201ENST00000620045 248 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC007490.1-201ENST00000624321 703 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 AC017037.3-201ENST00000625016 472 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.47□□□□□ -2.17
COL5A3P25940 DDX43P2-201ENST00000604753 1354 ntBASIC1.47□□□□□ -2.17
COL5A3P25940 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL5A3P25940 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
COL5A3P25940 RNU6-462P-201ENST00000362659 105 ntBASIC1.46□□□□□ -2.18
COL5A3P25940 Y_RNA.433-201ENST00000384089 102 ntBASIC1.46□□□□□ -2.18
COL5A3P25940 RNU6-1207P-201ENST00000384343 107 ntBASIC1.46□□□□□ -2.18
COL5A3P25940 RNU6-1072P-201ENST00000384703 107 ntBASIC1.46□□□□□ -2.18
COL5A3P25940 RNU6-443P-201ENST00000384780 107 ntBASIC1.46□□□□□ -2.18
COL5A3P25940 HMGB1P17-201ENST00000403495 628 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms