Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 U3.10-201ENST00000364459 214 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 Y_RNA.388-201ENST00000383919 113 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 MIR549A-201ENST00000385268 96 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 MRPS21P3-201ENST00000436696 262 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 SNORA31.9-201ENST00000516429 84 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 RNU6-412P-201ENST00000516434 106 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 SCARNA20.4-201ENST00000516969 131 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.29□□□□□ -1.56
COL9A1P20849 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 AC012468.1-201ENST00000604888 430 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 AC244107.2-201ENST00000611773 76 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 AL360270.2-201ENST00000562952 5985 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.29□□□□□ -1.56
COL9A1P20849 Z95114.1-201ENST00000624264 14574 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.29□□□□□ -1.56
COL9A1P20849 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL9A1P20849 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL9A1P20849 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL9A1P20849 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 AC106871.1-201ENST00000568324 3102 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.28□□□□□ -1.56
COL9A1P20849 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.28□□□□□ -1.56
COL9A1P20849 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.28□□□□□ -1.56
COL9A1P20849 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
COL9A1P20849 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 SNORD45.3-201ENST00000363836 72 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 MIR491-201ENST00000384877 84 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 FTH1P15-201ENST00000406984 280 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 MIR1182-201ENST00000408363 97 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 RNA5SP390-201ENST00000410191 113 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 AC073465.2-201ENST00000440938 498 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC5.28□□□□□ -1.56
COL9A1P20849 AC093331.1-201ENST00000521474 169 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.28□□□□□ -1.56
COL9A1P20849 AC091178.2-201ENST00000584401 117 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 AC011471.1-201ENST00000585766 187 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.28□□□□□ -1.56
COL9A1P20849 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC5.28□□□□□ -1.56
COL9A1P20849 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.28□□□□□ -1.56
COL9A1P20849 AC015914.2-201ENST00000618167 288 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 MIR3529-201ENST00000637713 78 ntBASIC5.28□□□□□ -1.56
COL9A1P20849 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL9A1P20849 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.27□□□□□ -1.57
COL9A1P20849 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.27□□□□□ -1.57
COL9A1P20849 SNORD114-19-201ENST00000363072 75 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RNU6-778P-201ENST00000363269 103 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RNA5SP509-201ENST00000364577 119 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL9A1P20849 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 RNU6-629P-201ENST00000384061 103 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RNU6-905P-201ENST00000384434 107 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RNU6-136P-201ENST00000384663 107 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL9A1P20849 U3.26-201ENST00000391236 204 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 MLLT10P1-201ENST00000418346 262 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 CYCSP49-201ENST00000420810 319 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 YME1L1P1-201ENST00000429435 297 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RPL34P20-201ENST00000442771 351 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.27□□□□□ -1.57
COL9A1P20849 AC083899.1-201ENST00000454465 3819 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RN7SL443P-201ENST00000464331 290 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RPS26P45-201ENST00000471748 340 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 SNORA70.12-201ENST00000516084 153 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
COL9A1P20849 MIR3200-201ENST00000580767 85 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 AC138965.3-201ENST00000623875 498 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 RNA5SP196-201ENST00000625967 102 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.27□□□□□ -1.57
COL9A1P20849 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL9A1P20849 AC126323.6-202ENST00000568092 3511 ntBASIC5.27□□□□□ -1.57
COL9A1P20849 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL9A1P20849 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
COL9A1P20849 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.26□□□□□ -1.57
COL9A1P20849 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL9A1P20849 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
COL9A1P20849 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.26□□□□□ -1.57
COL9A1P20849 RNA5SP90-201ENST00000364801 99 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 Y_RNA.361-201ENST00000365515 120 ntBASIC5.26□□□□□ -1.57
COL9A1P20849 SNORD18B-201ENST00000365659 72 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms