Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC136601.2-201ENST00000604356 474 ntBASIC2.55□□□□□ -2
HOXD4P09016 NUTF2P8-201ENST00000604593 363 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC104458.1-201ENST00000608243 463 ntBASIC2.55□□□□□ -2
HOXD4P09016 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXD4P09016 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.55□□□□□ -2
HOXD4P09016 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HOXD4P09016 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.55□□□□□ -2
HOXD4P09016 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXD4P09016 AC022336.2-201ENST00000568966 2538 ntBASIC2.54□□□□□ -2
HOXD4P09016 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.54□□□□□ -2
HOXD4P09016 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
HOXD4P09016 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXD4P09016 Y_RNA.38-201ENST00000362617 102 ntBASIC2.54□□□□□ -2
HOXD4P09016 Y_RNA.89-201ENST00000363031 102 ntBASIC2.54□□□□□ -2
HOXD4P09016 RNU6-179P-201ENST00000363350 107 ntBASIC2.54□□□□□ -2
HOXD4P09016 SNORD56.5-201ENST00000364281 72 ntBASIC2.54□□□□□ -2
HOXD4P09016 RNU6-534P-201ENST00000364877 106 ntBASIC2.54□□□□□ -2
HOXD4P09016 RNU6-61P-201ENST00000365528 109 ntBASIC2.54□□□□□ -2
HOXD4P09016 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXD4P09016 SNORA69-201ENST00000383895 132 ntBASIC2.54□□□□□ -2
HOXD4P09016 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXD4P09016 RNU6-908P-201ENST00000410160 94 ntBASIC2.54□□□□□ -2
HOXD4P09016 NEFMP1-201ENST00000443423 1006 ntBASIC2.54□□□□□ -2
HOXD4P09016 NFU1P2-201ENST00000448700 469 ntBASIC2.54□□□□□ -2
HOXD4P09016 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.54□□□□□ -2
HOXD4P09016 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.54□□□□□ -2
HOXD4P09016 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.54□□□□□ -2
HOXD4P09016 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.54□□□□□ -2
HOXD4P09016 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.54□□□□□ -2
HOXD4P09016 AC108078.2-201ENST00000510750 236 ntBASIC2.54□□□□□ -2
HOXD4P09016 TBCAP3-201ENST00000512475 312 ntBASIC2.54□□□□□ -2
HOXD4P09016 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.54□□□□□ -2
HOXD4P09016 SNORA31.3-201ENST00000516029 96 ntBASIC2.54□□□□□ -2
HOXD4P09016 RNU6-1256P-201ENST00000516539 103 ntBASIC2.54□□□□□ -2
HOXD4P09016 RNU6-1282P-201ENST00000516735 96 ntBASIC2.54□□□□□ -2
HOXD4P09016 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.54□□□□□ -2
HOXD4P09016 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.54□□□□□ -2
HOXD4P09016 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.54□□□□□ -2
HOXD4P09016 AC234778.2-201ENST00000566241 354 ntBASIC2.54□□□□□ -2
HOXD4P09016 MIR4775-201ENST00000581168 75 ntBASIC2.54□□□□□ -2
HOXD4P09016 AP000907.4-201ENST00000604143 237 ntBASIC2.54□□□□□ -2
HOXD4P09016 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.54□□□□□ -2
HOXD4P09016 MIR6715A-201ENST00000615929 79 ntBASIC2.54□□□□□ -2
HOXD4P09016 AL354950.2-201ENST00000617939 290 ntBASIC2.54□□□□□ -2
HOXD4P09016 AC010338.1-201ENST00000621823 717 ntBASIC2.54□□□□□ -2
HOXD4P09016 AC025034.2-201ENST00000623264 286 ntBASIC2.54□□□□□ -2
HOXD4P09016 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.54□□□□□ -2
HOXD4P09016 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXD4P09016 AC006020.1-201ENST00000420179 1854 ntBASIC2.54□□□□□ -2
HOXD4P09016 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXD4P09016 MTND5P17-201ENST00000418405 1603 ntBASIC2.53□□□□□ -2
HOXD4P09016 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
HOXD4P09016 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXD4P09016 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXD4P09016 Y_RNA.295-201ENST00000364918 102 ntBASIC2.53□□□□□ -2
HOXD4P09016 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.53□□□□□ -2
HOXD4P09016 MIR196B-201ENST00000384852 84 ntBASIC2.53□□□□□ -2
HOXD4P09016 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXD4P09016 AL139397.2-201ENST00000404529 772 ntBASIC2.53□□□□□ -2
HOXD4P09016 AL513331.1-201ENST00000411908 397 ntBASIC2.53□□□□□ -2
HOXD4P09016 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.53□□□□□ -2
HOXD4P09016 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.53□□□□□ -2
HOXD4P09016 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.53□□□□□ -2
HOXD4P09016 GTF2IP20-201ENST00000431663 360 ntBASIC2.53□□□□□ -2
HOXD4P09016 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.53□□□□□ -2
HOXD4P09016 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXD4P09016 EEF1B2P7-201ENST00000451177 676 ntBASIC2.53□□□□□ -2
HOXD4P09016 AL162395.1-201ENST00000457882 422 ntBASIC2.53□□□□□ -2
HOXD4P09016 RNU7-182P-201ENST00000459009 62 ntBASIC2.53□□□□□ -2
HOXD4P09016 MTAPP1-201ENST00000489154 819 ntBASIC2.53□□□□□ -2
HOXD4P09016 AC069439.1-201ENST00000494739 167 ntBASIC2.53□□□□□ -2
HOXD4P09016 HPRT1P3-201ENST00000539521 576 ntBASIC2.53□□□□□ -2
HOXD4P09016 AC068135.2-201ENST00000569293 1028 ntBASIC2.53□□□□□ -2
HOXD4P09016 AL162413.1-201ENST00000603198 110 ntBASIC2.53□□□□□ -2
HOXD4P09016 AC013553.2-201ENST00000604244 589 ntBASIC2.53□□□□□ -2
HOXD4P09016 AL049779.4-201ENST00000604500 156 ntBASIC2.53□□□□□ -2
HOXD4P09016 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.53□□□□□ -2
HOXD4P09016 YWHAEP7-203ENST00000622054 312 ntBASIC2.53□□□□□ -2
HOXD4P09016 FER-210ENST00000628534 558 ntTSL 5 BASIC2.53□□□□□ -2
HOXD4P09016 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
HOXD4P09016 AC099654.7-201ENST00000635788 2127 ntBASIC2.53□□□□□ -2.01
HOXD4P09016 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.53□□□□□ -2.01
HOXD4P09016 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
HOXD4P09016 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
HOXD4P09016 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD4P09016 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD4P09016 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.52□□□□□ -2.01
HOXD4P09016 RNU6-996P-201ENST00000365438 107 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNU1-138P-201ENST00000384093 164 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNU6-1029P-201ENST00000384109 107 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 Y_RNA.576-201ENST00000384781 102 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 AL360182.1-201ENST00000397433 468 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNA5SP21-201ENST00000410917 96 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNA5SP508-201ENST00000411327 119 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 BX682237.1-201ENST00000415016 335 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 AC092809.3-201ENST00000415453 231 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 MTCYBP8-201ENST00000422855 651 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXD4P09016 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms