Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MRPS36P3-201ENST00000519284 130 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 AL512310.1-201ENST00000548639 172 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 AC015712.3-201ENST00000559380 164 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 PCMTD1P2-201ENST00000565017 355 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 RPS15AP11-201ENST00000594193 385 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.06□□□□□ -2.08
CLDN9O95484 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.06□□□□□ -2.08
CLDN9O95484 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.06□□□□□ -2.08
CLDN9O95484 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.06□□□□□ -2.08
CLDN9O95484 AC244517.12-201ENST00000623581 663 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.06□□□□□ -2.08
CLDN9O95484 HSPA8P4-201ENST00000511877 1920 ntBASIC2.06□□□□□ -2.08
CLDN9O95484 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CLDN9O95484 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.06□□□□□ -2.08
CLDN9O95484 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CLDN9O95484 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CLDN9O95484 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 RNU6-166P-201ENST00000384371 107 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 MIR518D-201ENST00000385014 87 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 SNORA11.4-201ENST00000408823 129 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 RN7SKP158-201ENST00000410453 326 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 RNU2-63P-201ENST00000410792 194 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.05□□□□□ -2.08
CLDN9O95484 AL365184.2-201ENST00000431139 435 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 MTCYBP39-201ENST00000437562 491 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 IPO7P1-201ENST00000442031 636 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC124916.1-201ENST00000444020 547 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.05□□□□□ -2.08
CLDN9O95484 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.05□□□□□ -2.08
CLDN9O95484 AC068587.2-201ENST00000478386 781 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC140059.1-201ENST00000489238 361 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC090255.1-201ENST00000495779 349 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 CKS1BP2-201ENST00000497342 240 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.05□□□□□ -2.08
CLDN9O95484 MTND4P2-201ENST00000507767 1203 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC008526.1-201ENST00000509149 338 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 RNU7-51P-201ENST00000516560 62 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 Y_RNA.689-201ENST00000516589 107 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.05□□□□□ -2.08
CLDN9O95484 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.05□□□□□ -2.08
CLDN9O95484 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.05□□□□□ -2.08
CLDN9O95484 AC026464.5-201ENST00000562497 722 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC009063.1-201ENST00000563342 702 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.05□□□□□ -2.08
CLDN9O95484 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.05□□□□□ -2.08
CLDN9O95484 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.05□□□□□ -2.08
CLDN9O95484 MIR15A-201ENST00000607334 83 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AL050303.3-201ENST00000613704 284 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 AC012640.5-201ENST00000623897 319 ntBASIC2.05□□□□□ -2.08
CLDN9O95484 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
CLDN9O95484 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.04□□□□□ -2.08
CLDN9O95484 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.04□□□□□ -2.08
CLDN9O95484 RNU6-960P-201ENST00000364056 120 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL353621.1-201ENST00000418219 243 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 RPL23AP30-201ENST00000432419 501 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL353706.1-201ENST00000436728 494 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.04□□□□□ -2.08
CLDN9O95484 AL031659.1-201ENST00000447075 539 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL590365.1-201ENST00000450788 243 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC018437.1-201ENST00000492214 406 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 RNU6-991P-201ENST00000516168 107 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 RNA5SP458-201ENST00000516188 119 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 RNU1-40P-201ENST00000516816 164 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 RNU1-97P-201ENST00000516872 164 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 RNA5SP337-201ENST00000517007 109 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 IGKV3-31-201ENST00000523109 329 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.04□□□□□ -2.08
CLDN9O95484 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL138976.2-201ENST00000563989 694 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC174048.1-201ENST00000603389 144 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL670379.10-201ENST00000604330 253 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AL670379.9-201ENST00000605428 253 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC025754.2-201ENST00000606491 432 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
CLDN9O95484 AC009233.1-201ENST00000616477 371 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC104010.1-201ENST00000616889 150 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 MIR6873-201ENST00000622788 63 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 AC138627.2-201ENST00000624202 601 ntBASIC2.04□□□□□ -2.08
CLDN9O95484 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CLDN9O95484 RNU6-395P-201ENST00000365662 106 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 RNU1-148P-201ENST00000384472 162 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 MTCYBP36-201ENST00000404146 440 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.03□□□□□ -2.08
CLDN9O95484 AC009518.2-201ENST00000418056 731 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.03□□□□□ -2.08
CLDN9O95484 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.03□□□□□ -2.08
CLDN9O95484 WARS2P1-201ENST00000429678 537 ntBASIC2.03□□□□□ -2.08
CLDN9O95484 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms