Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP000763.2-201ENST00000540641 163 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 MIR5692C1-201ENST00000585309 91 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC022893.3-201ENST00000607665 437 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 uc_338.1-201ENST00000612113 180 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 AC084781.2-201ENST00000615568 161 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 MIR4275-201ENST00000636486 87 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 MIR7153-201ENST00000637758 57 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
LMX1BO60663 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.85□□□□□ -1.95
LMX1BO60663 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
LMX1BO60663 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.95
LMX1BO60663 ZNF519P1-201ENST00000449011 1626 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 SNORA63-201ENST00000363450 132 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RNU6-288P-201ENST00000363690 104 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RNU6-335P-201ENST00000364563 113 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RNA5SP189-201ENST00000364920 115 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.84□□□□□ -1.95
LMX1BO60663 RNU6-1013P-201ENST00000384180 107 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AL590004.1-201ENST00000405321 300 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RN7SKP111-201ENST00000410349 271 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RNA5SP293-201ENST00000410527 113 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RNA5SP229-201ENST00000410809 99 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RPS12P24-201ENST00000412619 387 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 COTL1P1-201ENST00000422309 375 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AL591704.1-201ENST00000432574 275 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AC236972.2-201ENST00000434979 310 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 SETP5-201ENST00000437270 562 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 FABP5P14-201ENST00000437273 393 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RPS24P13-201ENST00000442520 397 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.84□□□□□ -1.95
LMX1BO60663 HMGB3P8-201ENST00000449709 577 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RPS24P6-201ENST00000452670 400 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 RN7SL504P-201ENST00000494496 287 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.84□□□□□ -1.95
LMX1BO60663 HIGD1AP13-201ENST00000509878 289 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 TBCAP3-201ENST00000512475 312 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 SNORA14.1-201ENST00000516113 141 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AP004371.1-201ENST00000525240 214 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 ELOCP31-201ENST00000540463 467 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.84□□□□□ -1.95
LMX1BO60663 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.84□□□□□ -1.95
LMX1BO60663 FAM60BP-201ENST00000578364 658 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 LARP7P3-201ENST00000579888 337 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 MIR4276-201ENST00000584832 70 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 SNRPGP15-201ENST00000600149 222 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 SNRPGP17-201ENST00000603780 214 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.84□□□□□ -1.95
LMX1BO60663 MIR15A-201ENST00000607334 83 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 PART1_1.1-201ENST00000611761 217 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AL359547.2-201ENST00000615810 418 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 SNORD39.4-201ENST00000620099 78 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AC091903.1-201ENST00000624322 454 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.84□□□□□ -1.95
LMX1BO60663 AC134503.1-201ENST00000633048 54 ntBASIC2.84□□□□□ -1.95
LMX1BO60663 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.84□□□□□ -1.95
LMX1BO60663 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.84□□□□□ -1.95
LMX1BO60663 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
LMX1BO60663 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.84□□□□□ -1.96
LMX1BO60663 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
LMX1BO60663 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
LMX1BO60663 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.83□□□□□ -1.96
LMX1BO60663 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
LMX1BO60663 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
LMX1BO60663 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.83□□□□□ -1.96
LMX1BO60663 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.83□□□□□ -1.96
LMX1BO60663 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
LMX1BO60663 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
LMX1BO60663 MIR148B-201ENST00000362252 99 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 SNORA31-201ENST00000362607 130 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RNA5SP374-201ENST00000362939 125 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 Y_RNA.162-201ENST00000363683 102 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 Y_RNA.216-201ENST00000364205 93 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RNU6-805P-201ENST00000365643 106 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RNU6-1297P-201ENST00000384415 104 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RNY4P36-201ENST00000391116 96 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 MIR450B-201ENST00000401182 78 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 AC074085.1-201ENST00000413598 418 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RPLP0P7-201ENST00000416050 667 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.83□□□□□ -1.96
LMX1BO60663 RPL7P37-201ENST00000425095 738 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 Z82205.1-201ENST00000428456 297 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 AL591212.2-201ENST00000433923 257 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RPL23AP22-201ENST00000437556 453 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 Y_RNA.635-201ENST00000459041 101 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 AC027575.1-201ENST00000481064 460 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 SUMO2P6-201ENST00000505273 288 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
LMX1BO60663 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.83□□□□□ -1.96
LMX1BO60663 RPL23AP94-201ENST00000512518 302 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RNU6-914P-201ENST00000516749 109 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 RNU6-677P-201ENST00000516914 101 ntBASIC2.83□□□□□ -1.96
LMX1BO60663 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms