Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.77□□□□□ -1.97
SSX4O60224 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.77□□□□□ -1.97
SSX4O60224 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.77□□□□□ -1.97
SSX4O60224 AC073539.2-201ENST00000597113 165 ntBASIC2.77□□□□□ -1.97
SSX4O60224 AC107871.2-201ENST00000612894 502 ntBASIC2.77□□□□□ -1.97
SSX4O60224 AL157817.1-201ENST00000614264 790 ntBASIC2.77□□□□□ -1.97
SSX4O60224 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.77□□□□□ -1.97
SSX4O60224 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.77□□□□□ -1.97
SSX4O60224 MIR3199-2-201ENST00000636243 86 ntBASIC2.77□□□□□ -1.97
SSX4O60224 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
SSX4O60224 AC027514.1-201ENST00000588561 1603 ntBASIC2.77□□□□□ -1.97
SSX4O60224 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.77□□□□□ -1.97
SSX4O60224 ADAM3A-203ENST00000461344 2157 ntBASIC2.77□□□□□ -1.97
SSX4O60224 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
SSX4O60224 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.77□□□□□ -1.97
SSX4O60224 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.76□□□□□ -1.97
SSX4O60224 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SSX4O60224 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SSX4O60224 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.76□□□□□ -1.97
SSX4O60224 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SSX4O60224 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SSX4O60224 RNU6-45P-201ENST00000384471 107 ntBASIC2.76□□□□□ -1.97
SSX4O60224 SNORA26.7-201ENST00000391288 122 ntBASIC2.76□□□□□ -1.97
SSX4O60224 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.76□□□□□ -1.97
SSX4O60224 SAR1AP4-201ENST00000429225 591 ntBASIC2.76□□□□□ -1.97
SSX4O60224 RPL21P2-201ENST00000440049 481 ntBASIC2.76□□□□□ -1.97
SSX4O60224 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.76□□□□□ -1.97
SSX4O60224 SCARNA18-201ENST00000459004 134 ntBASIC2.76□□□□□ -1.97
SSX4O60224 RNU7-180P-201ENST00000459240 63 ntBASIC2.76□□□□□ -1.97
SSX4O60224 S100A11P2-201ENST00000467589 312 ntBASIC2.76□□□□□ -1.97
SSX4O60224 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.76□□□□□ -1.97
SSX4O60224 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.76□□□□□ -1.97
SSX4O60224 MTND3P25-201ENST00000509243 135 ntBASIC2.76□□□□□ -1.97
SSX4O60224 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.76□□□□□ -1.97
SSX4O60224 RNA5SP401-201ENST00000515920 127 ntBASIC2.76□□□□□ -1.97
SSX4O60224 RNU6-1281P-201ENST00000516223 105 ntBASIC2.76□□□□□ -1.97
SSX4O60224 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.76□□□□□ -1.97
SSX4O60224 OR5AQ1P-201ENST00000527596 927 ntBASIC2.76□□□□□ -1.97
SSX4O60224 AL137161.1-201ENST00000532231 390 ntBASIC2.76□□□□□ -1.97
SSX4O60224 BNIP3P6-201ENST00000549284 499 ntBASIC2.76□□□□□ -1.97
SSX4O60224 EIF4BP1-201ENST00000554881 351 ntBASIC2.76□□□□□ -1.97
SSX4O60224 LINC00933-203ENST00000559812 219 ntBASIC2.76□□□□□ -1.97
SSX4O60224 MIR5583-1-201ENST00000580941 59 ntBASIC2.76□□□□□ -1.97
SSX4O60224 U4.5-201ENST00000617137 123 ntBASIC2.76□□□□□ -1.97
SSX4O60224 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.76□□□□□ -1.97
SSX4O60224 MIR6852-201ENST00000621699 66 ntBASIC2.76□□□□□ -1.97
SSX4O60224 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SSX4O60224 AC093536.2-201ENST00000565257 1406 ntBASIC2.76□□□□□ -1.97
SSX4O60224 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SSX4O60224 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.75□□□□□ -1.97
SSX4O60224 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.75□□□□□ -1.97
SSX4O60224 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.75□□□□□ -1.97
SSX4O60224 RNU6-1090P-201ENST00000364065 94 ntBASIC2.75□□□□□ -1.97
SSX4O60224 SNORD14B-201ENST00000364533 90 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RNU6-7-201ENST00000364784 107 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RNU6-8-201ENST00000365467 107 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RNU6-898P-201ENST00000365627 104 ntBASIC2.75□□□□□ -1.97
SSX4O60224 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SSX4O60224 SNORD70.1-201ENST00000391007 85 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RPL21P75-201ENST00000396599 483 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RPL21P28-201ENST00000401418 483 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL592114.1-201ENST00000403842 483 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL606923.1-201ENST00000406616 190 ntBASIC2.75□□□□□ -1.97
SSX4O60224 MIR548F1-201ENST00000408667 84 ntBASIC2.75□□□□□ -1.97
SSX4O60224 MIR1289-1-201ENST00000408836 144 ntBASIC2.75□□□□□ -1.97
SSX4O60224 Y_RNA.599-201ENST00000410489 109 ntBASIC2.75□□□□□ -1.97
SSX4O60224 Y_RNA.619-201ENST00000410951 90 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 AL353621.1-201ENST00000418219 243 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.75□□□□□ -1.97
SSX4O60224 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.75□□□□□ -1.97
SSX4O60224 AL627311.1-201ENST00000431514 115 ntBASIC2.75□□□□□ -1.97
SSX4O60224 MTND1P4-201ENST00000435196 415 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.75□□□□□ -1.97
SSX4O60224 RPS15AP27-201ENST00000449183 343 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC233279.1-201ENST00000455300 423 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 RPL21P39-201ENST00000463605 483 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RPL21P93-201ENST00000480465 489 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC087190.1-201ENST00000484462 480 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC093591.1-201ENST00000491435 481 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 RPL21P16-201ENST00000495531 483 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.75□□□□□ -1.97
SSX4O60224 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.75□□□□□ -1.97
SSX4O60224 LRRC34P2-201ENST00000514850 553 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RNU1-86P-201ENST00000516108 154 ntBASIC2.75□□□□□ -1.97
SSX4O60224 RNU1-107P-201ENST00000516617 154 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 AC006199.1-201ENST00000548728 219 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL157687.1-201ENST00000554853 619 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.75□□□□□ -1.97
SSX4O60224 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 AC008739.2-201ENST00000597006 317 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.75□□□□□ -1.97
SSX4O60224 AL162413.1-201ENST00000603198 110 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL355877.2-201ENST00000603670 358 ntBASIC2.75□□□□□ -1.97
SSX4O60224 AL645944.1-201ENST00000603857 493 ntBASIC2.75□□□□□ -1.97
SSX4O60224 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms