Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PGBD4P5-201ENST00000445958 426 ntBASIC0.51□□□□□ -2.33
CCDC88BA6NC98 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC88BA6NC98 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC88BA6NC98 AC022387.2-201ENST00000604050 448 ntBASIC0.51□□□□□ -2.33
CCDC88BA6NC98 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.51□□□□□ -2.33
CCDC88BA6NC98 AC006213.5-201ENST00000619673 288 ntBASIC0.51□□□□□ -2.33
CCDC88BA6NC98 RNA5SP240-201ENST00000365355 128 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 PRRC2CP1-201ENST00000404428 159 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 MTATP6P31-201ENST00000406985 692 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 UBE2V1P4-201ENST00000425374 344 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 AC092470.1-201ENST00000546187 132 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 AL139344.1-201ENST00000605228 195 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 AL391597.1-201ENST00000618707 694 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.5□□□□□ -2.33
CCDC88BA6NC98 MTND2P41-201ENST00000637599 773 ntBASIC0.5□□□□□ -2.33
CCDC88BA6NC98 RNA5SP327-201ENST00000362494 101 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 RNU6-748P-201ENST00000384648 107 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 RPS27P22-201ENST00000478056 241 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 RAP1BP2-201ENST00000478270 544 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AC145146.1-201ENST00000496370 254 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AC091435.1-201ENST00000505442 584 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 SNORA4.4-201ENST00000515921 135 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 RNU6-798P-201ENST00000516912 103 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 HAUS1P3-201ENST00000523909 662 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 CENPUP1-201ENST00000526649 1202 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 AL138963.2-201ENST00000605137 226 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.49□□□□□ -2.33
CCDC88BA6NC98 ZNF680P1-201ENST00000436625 1469 ntBASIC0.49□□□□□ -2.33
CCDC88BA6NC98 RNU6-271P-201ENST00000363858 105 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 RNU2-36P-201ENST00000410361 191 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 USP9YP26-201ENST00000421008 661 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 USP9YP18-201ENST00000425912 695 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 USP9YP24-201ENST00000434374 697 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 USP9YP17-201ENST00000444617 696 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AC111000.5-201ENST00000506559 1178 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 RNU6-1004P-201ENST00000516584 111 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AL021879.1-201ENST00000611756 288 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 SNORA4.1-201ENST00000364263 144 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 MIR325-201ENST00000385260 98 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 YWHAZP8-201ENST00000436935 731 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 SNORD124-201ENST00000459577 104 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AC104164.3-201ENST00000467363 1258 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88BA6NC98 HMGN2P15-201ENST00000585707 270 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 AC008121.1-201ENST00000603244 268 ntBASIC0.48□□□□□ -2.33
CCDC88BA6NC98 Y_RNA.60-201ENST00000362831 98 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 RNU6-339P-201ENST00000384310 107 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 RPL36P19-201ENST00000430744 301 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.47□□□□□ -2.33
CCDC88BA6NC98 HSPE1P13-201ENST00000451143 297 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AC079140.2-201ENST00000506193 142 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AC005832.3-201ENST00000537929 631 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.47□□□□□ -2.33
CCDC88BA6NC98 MIR4636-201ENST00000582271 80 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AC012669.1-201ENST00000603209 283 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 AC013468.1-201ENST00000608680 598 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 MTND5P30-201ENST00000452896 1731 ntBASIC0.47□□□□□ -2.33
CCDC88BA6NC98 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
CCDC88BA6NC98 RNU1-124P-201ENST00000363861 145 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 RNU1-96P-201ENST00000364163 162 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AC008494.2-201ENST00000514544 370 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 SNORA31.22-201ENST00000517204 135 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AC105036.1-201ENST00000566222 271 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AC025588.3-201ENST00000604182 274 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AL078604.3-201ENST00000615580 211 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AC007792.1-201ENST00000623023 402 ntBASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.46□□□□□ -2.34
CCDC88BA6NC98 AL049714.1-201ENST00000466686 347 ntBASIC0.45□□□□□ -2.34
CCDC88BA6NC98 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.45□□□□□ -2.34
CCDC88BA6NC98 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.45□□□□□ -2.34
CCDC88BA6NC98 AP000403.1-201ENST00000603349 851 ntBASIC0.45□□□□□ -2.34
CCDC88BA6NC98 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.45□□□□□ -2.34
CCDC88BA6NC98 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.45□□□□□ -2.34
CCDC88BA6NC98 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.45□□□□□ -2.34
CCDC88BA6NC98 RNU6-750P-201ENST00000390946 107 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms