Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 CPDP1-201ENST00000579660 283 ntBASIC3.45□□□□□ -1.86
VSX1Q9NZR4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC008737.2-201ENST00000599446 118 ntBASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC136443.5-201ENST00000603741 370 ntBASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC004805.2-201ENST00000605382 482 ntBASIC3.45□□□□□ -1.86
VSX1Q9NZR4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC092608.2-201ENST00000624427 218 ntBASIC3.45□□□□□ -1.86
VSX1Q9NZR4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.45□□□□□ -1.86
VSX1Q9NZR4 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RLIMP1-201ENST00000339626 1680 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 Y_RNA.31-201ENST00000362574 102 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RNU6-790P-201ENST00000384479 105 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 MIR591-201ENST00000385290 95 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RPS26P8-201ENST00000393490 348 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RNU6-174P-201ENST00000410406 106 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RNU6-55P-201ENST00000411092 107 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 AL133396.1-201ENST00000432048 687 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 NDUFB4P6-201ENST00000436819 366 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 MTATP6P7-201ENST00000453315 681 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 MTND5P22-201ENST00000458380 195 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 MIR2053-201ENST00000459295 91 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RPS23P7-201ENST00000466210 444 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 AC116655.1-201ENST00000508324 901 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 RN7SKP122-201ENST00000515923 296 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 SNORA31.19-201ENST00000517079 126 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 AC093331.1-201ENST00000521474 169 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 GNAI2P1-201ENST00000541815 315 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 SUB1P3-201ENST00000564581 315 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 MIR6867-201ENST00000610636 67 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 AC004852.3-201ENST00000614131 326 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 SCARNA4-202ENST00000625402 129 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 MTND5P16-201ENST00000460269 1703 ntBASIC3.44□□□□□ -1.86
VSX1Q9NZR4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VSX1Q9NZR4 AC006504.1-201ENST00000562493 3666 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNU1-18P-201ENST00000363062 164 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNA5SP443-201ENST00000363083 132 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 Y_RNA.151-201ENST00000363566 112 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 DEFB109C-201ENST00000382575 264 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 DEFB109B-201ENST00000382656 264 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNU6-217P-201ENST00000384164 104 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNU6-140P-201ENST00000384566 108 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AP000567.1-201ENST00000406413 156 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 SNORD56-201ENST00000413522 71 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 MCFD2P1-201ENST00000417812 300 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RSL24D1P6-201ENST00000426934 401 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RPL23AP50-201ENST00000434149 455 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AL583843.1-201ENST00000456070 346 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC092798.1-201ENST00000458542 409 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC133134.1-201ENST00000466800 359 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC103987.1-201ENST00000473394 348 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC068781.1-201ENST00000488231 618 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 TRBV12-2-201ENST00000489763 344 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNU6-475P-201ENST00000516073 104 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNU1-61P-201ENST00000516107 151 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 RNU6-703P-201ENST00000516946 107 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 Y_RNA.720-201ENST00000517166 92 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC104576.1-201ENST00000524225 88 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 HMGB1P14-201ENST00000557424 591 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 MIR4273-201ENST00000582824 84 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AL137849.1-201ENST00000604767 169 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AL121917.1-203ENST00000605534 577 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 FP236240.3-201ENST00000623061 327 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC091925.1-201ENST00000623204 462 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 AC112484.5-201ENST00000624189 228 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 SNORA50A-202ENST00000629536 136 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 MTND5P30-201ENST00000452896 1731 ntBASIC3.43□□□□□ -1.86
VSX1Q9NZR4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
VSX1Q9NZR4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms