Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
DDX56Q9NY93 RNU6-78P-201ENST00000362897 107 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 RNU6-942P-201ENST00000363002 107 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 Y_RNA.86-201ENST00000363020 111 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AL162578.1-201ENST00000406202 378 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC138393.2-201ENST00000414742 246 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 RPL7P2-201ENST00000427639 268 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 RPL23AP58-201ENST00000440453 469 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 NUTF2P7-201ENST00000453086 375 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 RN7SL594P-201ENST00000470590 287 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 MED28P2-201ENST00000475771 317 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC002456.2-201ENST00000509356 380 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 SCARNA11.3-201ENST00000517276 130 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC090136.1-201ENST00000520009 240 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC118273.2-201ENST00000532092 465 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 TGIF1P1-201ENST00000558095 802 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 AL121757.2-201ENST00000611223 313 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 AC022149.2-201ENST00000621061 203 ntBASIC3.72□□□□□ -1.81
DDX56Q9NY93 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
DDX56Q9NY93 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
DDX56Q9NY93 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
DDX56Q9NY93 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
DDX56Q9NY93 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.71□□□□□ -1.81
DDX56Q9NY93 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 MFSD8-236ENST00000641509 4050 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 MTND5P30-201ENST00000452896 1731 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
DDX56Q9NY93 SNORD116-20-201ENST00000384529 92 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 U3.26-201ENST00000391236 204 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AL356776.1-201ENST00000406574 447 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 SNORD56-201ENST00000413522 71 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AP000852.1-201ENST00000472460 573 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 RPL23AP45-201ENST00000476406 468 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 RPL23AP49-201ENST00000492925 468 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 RNU5B-3P-201ENST00000516601 115 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC026333.2-201ENST00000542164 106 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 PSMA3P-201ENST00000555485 635 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 MIR5692C1-201ENST00000585309 91 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC018638.8-201ENST00000588755 281 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC010620.2-201ENST00000600135 313 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC096772.1-201ENST00000609146 564 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC010378.1-201ENST00000619270 362 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 AC009033.1-201ENST00000624279 431 ntBASIC3.71□□□□□ -1.82
DDX56Q9NY93 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.71□□□□□ -1.82
DDX56Q9NY93 Y_RNA.72-201ENST00000362894 103 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 Y_RNA.160-201ENST00000363677 92 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 Y_RNA.167-201ENST00000363735 109 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 RNU6-214P-201ENST00000384130 107 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 EI24P2-201ENST00000397776 1076 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC093151.1-201ENST00000427711 313 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL591043.1-201ENST00000432461 424 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL357552.1-201ENST00000445254 415 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 RPS3AP46-201ENST00000448352 682 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC087884.1-201ENST00000469738 328 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC117503.1-201ENST00000472241 394 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 FAM206BP-201ENST00000510179 541 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC025465.4-201ENST00000513422 638 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC007991.1-201ENST00000522680 631 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 COPS8P3-201ENST00000526024 482 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AC090617.10-201ENST00000624308 134 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 U4.7-201ENST00000638126 106 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.7□□□□□ -1.82
DDX56Q9NY93 AL021368.2-201ENST00000606125 5352 ntBASIC3.7□□□□□ -1.82
DDX56Q9NY93 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
DDX56Q9NY93 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
DDX56Q9NY93 RNU6-527P-201ENST00000363425 104 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 210.7 ms