Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC004852.3-201ENST00000614131 326 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AL359880.1-201ENST00000621879 266 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 SEPT14P19-203ENST00000633205 211 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
LIME1Q9H400 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
LIME1Q9H400 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC108206.1-201ENST00000570186 4159 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LIME1Q9H400 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.42□□□□□ -2.02
LIME1Q9H400 NACAP2-201ENST00000318548 624 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 SNORA9.2-201ENST00000365361 133 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 RNU6-395P-201ENST00000365662 106 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
LIME1Q9H400 CD24P4-201ENST00000382840 243 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 SNORA40C-201ENST00000391285 128 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 CISD1P1-201ENST00000393907 327 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
LIME1Q9H400 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.42□□□□□ -2.02
LIME1Q9H400 GTF2IP20-201ENST00000431663 360 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.42□□□□□ -2.02
LIME1Q9H400 MTND3P21-201ENST00000433774 331 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AL596276.1-201ENST00000434465 418 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.42□□□□□ -2.02
LIME1Q9H400 MTND1P1-201ENST00000445453 368 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AC092798.1-201ENST00000458542 409 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 GMFBP1-201ENST00000467831 427 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AC128713.1-201ENST00000471495 306 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AC107401.1-201ENST00000503426 685 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 RNU6-143P-201ENST00000516942 93 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.42□□□□□ -2.02
LIME1Q9H400 AP005435.4-201ENST00000529514 284 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 OR5AL2P-201ENST00000532185 920 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.42□□□□□ -2.02
LIME1Q9H400 MIR4703-201ENST00000577728 79 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 uc_338.11-201ENST00000619132 160 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 AC110079.1-202ENST00000635213 138 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.42□□□□□ -2.02
LIME1Q9H400 AC099654.12-201ENST00000639868 649 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.42□□□□□ -2.02
LIME1Q9H400 AC110491.1-201ENST00000562191 2010 ntBASIC2.42□□□□□ -2.02
LIME1Q9H400 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
LIME1Q9H400 AC092435.3-201ENST00000565538 3654 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
LIME1Q9H400 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIME1Q9H400 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIME1Q9H400 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIME1Q9H400 Y_RNA.33-201ENST00000362591 102 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 RNU6-1029P-201ENST00000384109 107 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 RNU6-550P-201ENST00000391057 101 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC068050.1-201ENST00000394891 380 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 SNORD88.1-201ENST00000408684 91 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.41□□□□□ -2.02
LIME1Q9H400 RNU2-9P-201ENST00000410194 145 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC023141.4-201ENST00000412031 328 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 UBE2V1P10-201ENST00000414685 269 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 OR6C66P-201ENST00000414917 930 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AL513477.1-202ENST00000417061 214 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AL353729.1-201ENST00000425044 720 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.41□□□□□ -2.02
LIME1Q9H400 WASF1P1-201ENST00000447560 1131 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AC104058.1-201ENST00000448028 297 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AL162395.1-201ENST00000457882 422 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.41□□□□□ -2.02
LIME1Q9H400 RPS29P15-201ENST00000458329 171 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC103975.1-201ENST00000482506 483 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.41□□□□□ -2.02
LIME1Q9H400 EIF4EP3-201ENST00000498782 656 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 RNA5SP148-201ENST00000516527 94 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.41□□□□□ -2.02
LIME1Q9H400 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AP001893.2-201ENST00000526949 202 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC107016.2-201ENST00000547968 190 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AL512310.1-201ENST00000548639 172 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AC027176.1-201ENST00000560204 514 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 SNORD53-201ENST00000579969 78 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 MIR4769-201ENST00000584126 77 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 MTND4LP5-201ENST00000605152 292 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC007684.1-201ENST00000609671 477 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AL161629.2-201ENST00000615347 275 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 MIR6817-201ENST00000615588 66 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC068792.1-201ENST00000621354 417 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC010338.1-201ENST00000621823 717 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AC124864.2-201ENST00000624736 186 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 AC064859.1-201ENST00000624741 174 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.41□□□□□ -2.02
LIME1Q9H400 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LIME1Q9H400 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LIME1Q9H400 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.41□□□□□ -2.02
LIME1Q9H400 AC093010.3-201ENST00000570269 15214 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 FAM35CP-201ENST00000554755 2470 ntBASIC2.41□□□□□ -2.02
LIME1Q9H400 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms