Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 U3.26-201ENST00000391236 204 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RN7SKP220-201ENST00000410611 288 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RNU6-55P-201ENST00000411092 107 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RNU6-954P-201ENST00000411355 107 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AL645937.1-202ENST00000421799 937 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 COTL1P1-201ENST00000422309 375 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 HMGB3P8-201ENST00000449709 577 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AC022493.1-201ENST00000492984 337 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 SNORA19.2-201ENST00000516013 114 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RN7SKP256-201ENST00000517201 314 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AP000889.1-201ENST00000530968 660 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AP002404.1-201ENST00000532005 451 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 HMGB1P14-201ENST00000557424 591 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AC073539.2-201ENST00000597113 165 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AL357078.3-201ENST00000607528 618 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AC103705.1-201ENST00000619013 241 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AL031601.2-202ENST00000622650 282 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RNU6-1252P-201ENST00000363054 104 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 SNORD113-7-201ENST00000363762 77 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RNU6-884P-201ENST00000363889 107 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RNU1-140P-201ENST00000365040 165 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RNU6-1013P-201ENST00000384180 107 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 SNORD15B-201ENST00000384714 146 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AL356057.2-201ENST00000403318 432 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RPLP0P7-201ENST00000416050 667 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RPL7P10-201ENST00000417407 739 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 USP9YP20-201ENST00000419224 558 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 HSPE1P1-201ENST00000421494 318 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 IFNA20P-201ENST00000436840 528 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC093019.1-201ENST00000443135 252 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 PPP1R2P5-201ENST00000457256 603 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC091951.2-201ENST00000500762 203 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 RNU4-49P-201ENST00000516080 140 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 SNORA31.19-201ENST00000517079 126 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC090115.3-201ENST00000553218 849 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 TRAV37-201ENST00000553906 342 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC005498.1-201ENST00000592125 465 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AL355598.1-201ENST00000604169 202 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 CTHRC1P1-201ENST00000605383 469 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC103710.3-201ENST00000608157 948 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AL121757.2-201ENST00000611223 313 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AC022306.2-201ENST00000617563 647 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AL137790.1-201ENST00000634283 177 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 MIR622-201ENST00000638396 96 ntBASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
PAAF1Q9BRP4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC121333.1-201ENST00000567488 2709 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 RNU6-1303P-201ENST00000364841 107 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 RNU6-658P-201ENST00000384606 106 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AL078595.1-201ENST00000404458 226 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 NDUFB4P5-201ENST00000415445 361 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AL365400.1-201ENST00000431854 640 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 NDUFA5P4-201ENST00000436704 385 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 MTND4LP16-201ENST00000440828 295 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AL583843.1-201ENST00000456070 346 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 snoU13.28-201ENST00000459235 104 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 RPL23AP62-201ENST00000463396 453 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 RPS29P26-201ENST00000477483 171 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 FAM206BP-201ENST00000510179 541 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 MIR892C-201ENST00000516410 77 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 RNU6-875P-201ENST00000516488 106 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 RNU6-273P-201ENST00000516937 96 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC009902.1-201ENST00000519351 183 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 MIR4782-201ENST00000577987 79 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 MIR4425-201ENST00000580572 84 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 BNIP3P25-201ENST00000596023 559 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 HSPE1P7-201ENST00000604681 321 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms