Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC244505.4-201ENST00000434905 287 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 SSXP5-201ENST00000443473 287 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 NDUFB1P2-201ENST00000449477 176 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RPL21P41-201ENST00000459863 264 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RPS29P12-201ENST00000460178 152 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU6-123P-201ENST00000516163 102 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 RNU6-506P-201ENST00000516553 94 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC009902.1-201ENST00000519351 183 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 SUB1P1-201ENST00000524415 382 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AL157871.3-201ENST00000557231 293 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC010338.1-201ENST00000621823 717 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC098679.4-201ENST00000624241 654 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 MIR6863-201ENST00000636112 90 ntBASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC3Q9BQI4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 RPL9P7-201ENST00000330965 580 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 Y_RNA.3-201ENST00000362331 103 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 SNORA62.1-201ENST00000364287 154 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 RNU6-1322P-201ENST00000364309 107 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 SNORA26.7-201ENST00000391288 122 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 RNU4-46P-201ENST00000410818 138 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 RN7SKP284-201ENST00000411002 343 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 OR6C66P-201ENST00000414917 930 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AL353193.1-201ENST00000421444 268 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 BPY2DP-201ENST00000422208 265 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC093151.1-201ENST00000427711 313 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 FABP5P13-201ENST00000452144 328 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC083798.1-201ENST00000472671 131 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC126182.1-201ENST00000478134 357 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AP004217.1-201ENST00000480579 346 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 EIF4EP3-201ENST00000498782 656 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC019235.1-201ENST00000503847 207 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC104806.1-201ENST00000508720 308 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AC104383.1-201ENST00000530297 370 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 OR5AL2P-201ENST00000532185 920 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 MIR4703-201ENST00000577728 79 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 ZNF861P-201ENST00000588126 639 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AL020991.1-201ENST00000612314 373 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 U4.5-201ENST00000617137 123 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 AL512643.1-201ENST00000635735 524 ntBASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
CCDC3Q9BQI4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC110491.1-201ENST00000562191 2010 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AP003122.5-201ENST00000527668 3766 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 Y_RNA.33-201ENST00000362591 102 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RNU6-371P-201ENST00000364283 108 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RNA5SP21-201ENST00000410917 96 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 UBE2V1P10-201ENST00000414685 269 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 ATG3P1-201ENST00000419507 911 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC098614.2-201ENST00000426040 255 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RPL21P2-201ENST00000440049 481 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 MTND1P18-201ENST00000448191 573 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 EEF1B2P7-201ENST00000451177 676 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC027673.1-201ENST00000456245 405 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AL590639.1-201ENST00000456484 337 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RPL26P9-201ENST00000457466 433 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RPL9P33-201ENST00000484311 566 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC009901.1-201ENST00000506703 541 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RBBP4P6-201ENST00000508098 202 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 SNORA40.12-201ENST00000516329 111 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 RNA5SP503-201ENST00000517047 117 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AP005435.4-201ENST00000529514 284 ntBASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC3Q9BQI4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms