Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 UBE2V1P2-201ENST00000397758 440 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 HMGB3P2-201ENST00000411913 584 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 RPS3AP3-201ENST00000411933 242 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC006946.1-201ENST00000429106 328 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 HMGB1P9-201ENST00000429856 646 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 GAPDHP17-201ENST00000449858 1001 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 PSPHP1-201ENST00000450062 261 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 MTCO2P29-201ENST00000465212 189 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC004924.1-201ENST00000480160 781 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 RNU2-10P-201ENST00000516375 211 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 RNU6-572P-201ENST00000516724 80 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 SNORA31.19-201ENST00000517079 126 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 RNU6-1315P-201ENST00000517187 99 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC090572.1-201ENST00000519251 160 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC135279.1-201ENST00000543493 504 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AL121821.2-201ENST00000556081 394 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 BNIP3P9-201ENST00000603714 553 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC126118.1-201ENST00000607744 628 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 MIR6134-201ENST00000617606 109 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 MIR6132-201ENST00000622083 109 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 AC004520.1-201ENST00000608362 1413 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 CKAP2P1-201ENST00000555477 2049 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 U3.4-201ENST00000363352 213 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RNU6-898P-201ENST00000365627 104 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RPS3AP36-201ENST00000398190 775 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 Y_RNA.598-201ENST00000410480 95 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RNU2-40P-201ENST00000410833 196 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 HMGN1P14-201ENST00000412459 517 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC096649.2-201ENST00000416186 393 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 HMGB1P27-201ENST00000431429 603 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RPL23AP30-201ENST00000432419 501 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 MTATP6P16-201ENST00000434543 526 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RPS15AP28-201ENST00000435088 386 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL161651.1-201ENST00000440882 223 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC092001.1-201ENST00000453012 261 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC093899.1-201ENST00000457984 376 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC090515.1-201ENST00000465295 476 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC104435.1-201ENST00000483483 166 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RBBP4P6-201ENST00000508098 202 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 RNA5SP200-201ENST00000516360 103 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AP005902.1-201ENST00000521358 186 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 MIR4448-201ENST00000584360 86 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL359999.1-201ENST00000604513 294 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC009831.4-201ENST00000620744 325 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC022079.1-201ENST00000621546 602 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 PISRT1-201ENST00000626175 531 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AL109809.4-201ENST00000603520 2185 ntBASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC54Q8NEL0 AC103710.2-202ENST00000641454 2853 ntBASIC1.96□□□□□ -2.09
CCDC54Q8NEL0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 RNU1-72P-201ENST00000362976 153 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 RNU5F-7P-201ENST00000363696 115 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 SNORA70.4-201ENST00000365509 134 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 RNU6-61P-201ENST00000365528 109 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 RNU5A-2P-201ENST00000384337 116 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 CIR1P3-201ENST00000405137 479 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 EEF1A1P40-201ENST00000412883 573 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AL356379.1-201ENST00000414105 126 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 SRIP2-201ENST00000428470 166 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 RPS6P15-201ENST00000431996 751 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms