Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 OR4H12P-201ENST00000556269 907 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 MIR4276-201ENST00000584832 70 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AC007619.2-201ENST00000605743 379 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC091812.1-201ENST00000432235 1948 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-1155P-201ENST00000363554 107 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-263P-201ENST00000363811 107 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-371P-201ENST00000364283 108 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 Y_RNA.480-201ENST00000384364 102 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AL357075.1-201ENST00000404107 726 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 RNU2-23P-201ENST00000410545 195 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC004552.1-201ENST00000419089 348 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AL160275.3-201ENST00000423876 471 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC099799.1-201ENST00000439809 192 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 RPS26P3-201ENST00000470205 348 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC090543.2-201ENST00000483963 348 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC004057.1-201ENST00000485827 348 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC005476.1-201ENST00000554427 397 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC012669.1-201ENST00000603209 283 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AL162713.1-201ENST00000604480 262 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AL356274.2-201ENST00000624379 3752 ntBASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
USHBP1Q8N6Y0 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AL353743.1-202ENST00000431724 1695 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 Y_RNA.152-201ENST00000363578 100 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-379P-201ENST00000363813 104 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 Y_RNA.380-201ENST00000365663 111 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 Y_RNA.424-201ENST00000384063 103 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 MIR153-1-201ENST00000384914 90 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 RNA5SP39-201ENST00000411245 120 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AC243428.1-201ENST00000421099 264 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 PPP1R11P2-201ENST00000423543 382 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 RN7SKP258-201ENST00000517151 304 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AP005902.1-201ENST00000521358 186 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 HMGB3P26-201ENST00000560051 582 ntBASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.54□□□□□ -1.68
USHBP1Q8N6Y0 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-288P-201ENST00000363690 104 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 Y_RNA.485-201ENST00000384395 102 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-823P-201ENST00000391042 103 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-817P-201ENST00000391083 104 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 RNU7-138P-201ENST00000459479 64 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 ERHP1-201ENST00000523006 310 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 MIR5692A1-201ENST00000580523 69 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 SDR42E1P2-201ENST00000614861 481 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 U2.1-201ENST00000618978 145 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 AL606534.2-204ENST00000635008 178 ntBASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
USHBP1Q8N6Y0 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.53□□□□□ -1.69
USHBP1Q8N6Y0 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
USHBP1Q8N6Y0 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms