Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RNA5SP191-201ENST00000362585 102 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 RN7SKP113-201ENST00000363891 295 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 Y_RNA.293-201ENST00000364908 93 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 SNORA2.3-201ENST00000383920 135 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 SNORA77-201ENST00000408716 125 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 CYCSP10-201ENST00000417973 294 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AL354714.3-201ENST00000447284 493 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AC008897.1-201ENST00000494006 347 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AC133485.4-201ENST00000561835 220 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AC138907.4-201ENST00000570107 226 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 MIR4330-201ENST00000579077 105 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 AC068700.1-201ENST00000565862 3754 ntBASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNFT1Q5M7Z0 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 MUC2-202ENST00000613187 4845 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 Y_RNA.287-201ENST00000364853 94 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 MIR487A-201ENST00000385009 80 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 MIR526A2-201ENST00000390198 65 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 RNU6-1228P-201ENST00000391014 107 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 SNORA26.5-201ENST00000391215 123 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AL591034.1-201ENST00000407447 340 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 Y_RNA.630-201ENST00000411370 108 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AC009238.2-201ENST00000431026 355 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 HSPE1P6-201ENST00000479457 291 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AC023424.1-201ENST00000496058 459 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 AL356157.2-201ENST00000605122 111 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 Z73965.1-201ENST00000623412 2297 ntBASIC4.55□□□□□ -1.68
RNFT1Q5M7Z0 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC092376.2-201ENST00000622621 4116 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RNU6-640P-201ENST00000363693 105 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RNU6-873P-201ENST00000363833 107 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RNU6-1164P-201ENST00000364428 107 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 Y_RNA.348-201ENST00000365403 103 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC068538.1-201ENST00000376856 336 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RNU6-72P-201ENST00000384285 79 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 Y_RNA.572-201ENST00000384757 98 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC007560.1-201ENST00000426912 237 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC112220.1-201ENST00000434628 355 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AL078601.1-201ENST00000444542 271 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC245047.8-201ENST00000456455 284 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RN7SL738P-201ENST00000470264 297 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RN7SL860P-201ENST00000473738 223 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC091874.1-201ENST00000511402 339 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 Y_RNA.692-201ENST00000516627 105 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 RNA5SP54-201ENST00000516951 92 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC090142.3-201ENST00000519012 385 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AC005255.1-201ENST00000593748 216 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 AL121890.5-201ENST00000620848 304 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 SNORA43.4-201ENST00000629559 138 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 BMS1P21-201ENST00000634565 365 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 MIR4496-201ENST00000635896 61 ntBASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNFT1Q5M7Z0 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms