Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC004805.2-201ENST00000605382 482 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 U73479.1-201ENST00000618062 168 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AL589994.2-201ENST00000621124 579 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC243312.2-201ENST00000623340 601 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.89□□□□□ -1.79
USP39Q53GS9 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 LINC02471-203ENST00000641941 4752 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
USP39Q53GS9 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
USP39Q53GS9 Y_RNA.152-201ENST00000363578 100 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 Y_RNA.424-201ENST00000384063 103 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 Y_RNA.461-201ENST00000384263 103 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 MIR218-2-201ENST00000385006 110 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AC096664.2-201ENST00000411843 406 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AC017083.1-201ENST00000428093 483 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 AC073910.1-201ENST00000445047 438 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AC092436.3-201ENST00000511788 257 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 Y_RNA.715-201ENST00000517082 110 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.88□□□□□ -1.79
USP39Q53GS9 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.88□□□□□ -1.79
USP39Q53GS9 MIR3128-201ENST00000581957 66 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.88□□□□□ -1.79
USP39Q53GS9 AC078899.3-201ENST00000599065 212 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.88□□□□□ -1.79
USP39Q53GS9 AC006254.3-201ENST00000603353 884 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 HMGN2P28-201ENST00000606102 262 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 TUG1_2.1-201ENST00000614234 87 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AL359547.2-201ENST00000615810 418 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 U6.105-201ENST00000637379 88 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 AC093908.1-201ENST00000623125 8092 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 AC010615.1-201ENST00000594254 1764 ntBASIC3.88□□□□□ -1.79
USP39Q53GS9 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP39Q53GS9 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.88□□□□□ -1.79
USP39Q53GS9 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
USP39Q53GS9 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP39Q53GS9 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP39Q53GS9 Y_RNA.26-201ENST00000362539 101 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 Y_RNA.39-201ENST00000362620 98 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 Y_RNA.60-201ENST00000362831 98 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 RNVU1-3-201ENST00000364313 161 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 RNU6-701P-201ENST00000384059 107 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 Y_RNA.483-201ENST00000384380 101 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 AL139039.1-201ENST00000401900 692 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 AC087650.1-201ENST00000431445 468 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 AC011816.1-201ENST00000441346 546 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 FTH1P25-201ENST00000447665 469 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.87□□□□□ -1.79
USP39Q53GS9 RNU7-187P-201ENST00000458985 68 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 AC010631.1-201ENST00000474150 156 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 RNU6-406P-201ENST00000516470 107 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 SCARNA14-201ENST00000516903 136 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 AC025423.5-201ENST00000550230 219 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 HSBP1P1-201ENST00000555205 166 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.87□□□□□ -1.79
USP39Q53GS9 MIR3200-201ENST00000580767 85 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 AC005899.2-201ENST00000584353 90 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 SNRPGP15-201ENST00000600149 222 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 MIR4272-201ENST00000635924 64 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP39Q53GS9 AL359893.1-201ENST00000447628 1580 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.87□□□□□ -1.79
USP39Q53GS9 AP001148.1-201ENST00000624124 2359 ntBASIC3.87□□□□□ -1.79
USP39Q53GS9 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP39Q53GS9 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USP39Q53GS9 OTUD4P1-201ENST00000237841 3067 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.86□□□□□ -1.79
USP39Q53GS9 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USP39Q53GS9 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
USP39Q53GS9 AC116096.1-201ENST00000566804 2314 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 RNU1-35P-201ENST00000362782 153 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 Y_RNA.214-201ENST00000364201 112 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
USP39Q53GS9 RPS4XP7-201ENST00000406274 780 ntBASIC3.86□□□□□ -1.79
USP39Q53GS9 RNU2-38P-201ENST00000410856 79 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms