Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 HMGB3P2-201ENST00000411913 584 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AL589872.1-201ENST00000426602 288 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 MYL8P-204ENST00000431574 518 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 PGBD4P3-201ENST00000440731 581 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 USP9YP12-201ENST00000450481 570 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RNU7-125P-201ENST00000458760 62 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 KLF3P2-201ENST00000465138 268 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 MTCO2P29-201ENST00000465212 189 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RPL30P6-201ENST00000475925 342 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RNA5SP112-201ENST00000515937 99 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC008015.1-201ENST00000555505 465 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 HMGN1P30-201ENST00000589286 268 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 WISP1-OT1-201ENST00000602893 642 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC112191.3-201ENST00000604371 277 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC018638.7-201ENST00000605836 1114 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC012640.5-201ENST00000623897 319 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC025048.6-202ENST00000627667 438 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AC099654.13-201ENST00000639774 207 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 AP000553.5-201ENST00000641933 54 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 RNU5E-1-201ENST00000362477 120 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 SNORA75B-201ENST00000384053 137 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 RNU6-39P-201ENST00000384344 107 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 EIF4EP4-201ENST00000424916 578 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC137499.1-201ENST00000427602 88 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 HIGD1AP2-201ENST00000446367 280 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 FABP5P13-201ENST00000452144 328 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 BTF3P15-201ENST00000455606 336 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC104435.1-201ENST00000483483 166 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC011005.2-201ENST00000487324 359 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC118465.1-201ENST00000513820 1271 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 MIR892C-201ENST00000516410 77 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC022878.1-201ENST00000530684 149 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 LRRC37A5P-203ENST00000580181 585 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC024581.2-201ENST00000619986 252 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC009831.4-201ENST00000620744 325 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 AC079248.2-201ENST00000623779 326 ntBASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC40Q4G0X9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC073343.1-201ENST00000328239 651 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 RNU1-91P-201ENST00000364746 163 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 Y_RNA.560-201ENST00000384689 102 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 Z99497.1-201ENST00000421282 135 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 RPS15AP9-201ENST00000439856 381 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 UBE2D3P4-201ENST00000441973 436 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC003071.1-201ENST00000451219 789 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC004263.1-201ENST00000479327 332 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 RPL23AP49-201ENST00000492925 468 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 MTND4P2-201ENST00000507767 1203 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 RNU6-232P-201ENST00000517144 64 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 MTATP6P24-201ENST00000576835 677 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 MIR6132-201ENST00000622083 109 ntBASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
CCDC40Q4G0X9 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
CCDC40Q4G0X9 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 RNA5SP37-201ENST00000365420 130 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 RNU6-395P-201ENST00000365662 106 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC003685.2-201ENST00000422795 395 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 RPS3AP44-201ENST00000425466 790 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 USP9YP15-201ENST00000442391 422 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms