Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL138889.2-201ENST00000603883 242 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 FTX_3.1-201ENST00000610451 147 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC024940.5-201ENST00000622889 474 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AL160394.1-201ENST00000624765 724 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
USP41Q3LFD5 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.09□□□□□ -1.92
USP41Q3LFD5 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.09□□□□□ -1.92
USP41Q3LFD5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
USP41Q3LFD5 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
USP41Q3LFD5 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 RNA5SP252-201ENST00000391131 119 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 RNU1-101P-201ENST00000391171 127 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 RNU6-903P-201ENST00000391270 109 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 MIR887-201ENST00000401258 79 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 AL354719.1-201ENST00000406535 843 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 MTATP6P13-201ENST00000438531 667 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 RPL37P4-201ENST00000448908 268 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 NIPA2P5-201ENST00000452282 464 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC010099.1-201ENST00000455434 375 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 RNU6-261P-201ENST00000459506 102 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC092989.1-201ENST00000481235 277 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 EIF4EP3-201ENST00000498782 656 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 RNU6-1315P-201ENST00000517187 99 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 AL157687.1-201ENST00000554853 619 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC068135.2-201ENST00000569293 1028 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC012119.1-201ENST00000603184 222 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 uc_338.11-201ENST00000619132 160 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.08□□□□□ -1.92
USP41Q3LFD5 MTND4P14-201ENST00000435799 1354 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP41Q3LFD5 FAM35CP-201ENST00000554755 2470 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 AC022336.2-201ENST00000568966 2538 ntBASIC3.08□□□□□ -1.92
USP41Q3LFD5 GABRG2-229ENST00000641017 3628 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP41Q3LFD5 RNU6-552P-201ENST00000362869 119 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 RNY4P14-201ENST00000363656 96 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 RNU6-884P-201ENST00000363889 107 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 Y_RNA.453-201ENST00000384223 109 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 CIR1P3-201ENST00000405137 479 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 RNU4-46P-201ENST00000410818 138 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AL591704.1-201ENST00000432574 275 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC092473.1-201ENST00000441098 221 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AL031183.1-201ENST00000457667 207 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 SNRPFP3-201ENST00000457792 225 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 RN7SL499P-201ENST00000481141 276 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 RN7SKP43-201ENST00000516173 320 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 RNU6-835P-201ENST00000516974 104 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 MTND1P35-201ENST00000526739 508 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AP005435.4-201ENST00000529514 284 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC109635.3-201ENST00000529536 185 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 MTCO3P24-201ENST00000572729 782 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC078899.3-201ENST00000599065 212 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AL162413.1-201ENST00000603198 110 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC010338.1-201ENST00000621823 717 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 MIR1321-201ENST00000637766 79 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AC233263.6-201ENST00000631132 1963 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
USP41Q3LFD5 AL359693.1-201ENST00000614959 2407 ntBASIC3.07□□□□□ -1.92
USP41Q3LFD5 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USP41Q3LFD5 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
USP41Q3LFD5 AC062016.1-201ENST00000355719 319 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 Y_RNA.33-201ENST00000362591 102 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 MIR181B1-201ENST00000385240 110 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 NUP35P1-201ENST00000422734 947 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 MTCYBP5-201ENST00000423752 1135 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AC063976.3-201ENST00000426849 329 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.06□□□□□ -1.92
USP41Q3LFD5 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.06□□□□□ -1.92
USP41Q3LFD5 SEPT14P3-201ENST00000439401 183 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.06□□□□□ -1.92
USP41Q3LFD5 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.06□□□□□ -1.92
USP41Q3LFD5 AL732372.2-207ENST00000445840 183 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AL354685.2-201ENST00000448218 1447 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 SEPT14P2-201ENST00000453405 183 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.06□□□□□ -1.92
USP41Q3LFD5 TRBV1-201ENST00000476502 284 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 RN7SL633P-201ENST00000488974 297 ntBASIC3.06□□□□□ -1.92
USP41Q3LFD5 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms