Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL670379.10-201ENST00000604330 253 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AC007179.3-201ENST00000604976 235 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AL670379.9-201ENST00000605428 253 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 ATP5A1P2-202ENST00000616464 443 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 FTLP6-201ENST00000355274 422 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.58-201ENST00000362807 102 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.154-201ENST00000363624 102 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RNY3P1-201ENST00000365085 102 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RNY3-201ENST00000365484 102 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.490-201ENST00000384413 102 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 SNORA1.3-201ENST00000384676 136 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 MIR34B-201ENST00000385076 84 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AL592148.1-201ENST00000413568 445 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AC017079.2-201ENST00000416102 485 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 UBE2V1P4-201ENST00000425374 344 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 CYCSP4-201ENST00000429682 331 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AL158071.1-201ENST00000430315 461 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.632-201ENST00000459189 102 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AC074250.1-201ENST00000511117 192 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-1332P-201ENST00000516666 104 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-273P-201ENST00000516937 96 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-703P-201ENST00000516946 107 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AP005639.2-201ENST00000527592 928 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AC026371.1-201ENST00000551867 419 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 IMMP1LP2-201ENST00000552954 492 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 APOOP1-201ENST00000604695 592 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AC016727.1-205ENST00000605437 569 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RMST_8.1-201ENST00000610287 165 ntBASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTCHD3Q3KNS1 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
PTCHD3Q3KNS1 RNA5SP50-201ENST00000363731 107 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 RNA5SP72-201ENST00000364442 117 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-593P-201ENST00000364716 112 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-384P-201ENST00000364900 104 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 Y_RNA.482-201ENST00000384377 111 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 RNVU1-14-201ENST00000384770 164 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 FAT1P1-201ENST00000406588 507 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AL096701.2-201ENST00000416920 238 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC098614.2-201ENST00000426040 255 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 MTATP6P7-201ENST00000453315 681 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AL136097.1-201ENST00000456945 913 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 SNORD19B-201ENST00000459623 84 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC025518.1-201ENST00000479856 347 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AL049830.2-201ENST00000480072 201 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC139453.3-201ENST00000493276 369 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 RPS27P27-201ENST00000498779 255 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 RN7SKP24-201ENST00000515888 284 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 HPRT1P3-201ENST00000539521 576 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 SYF2P1-201ENST00000550658 413 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AMZ2P1-203ENST00000565833 850 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AL355598.1-201ENST00000604169 202 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AP000787.2-201ENST00000604432 568 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 MIR7975-201ENST00000619350 68 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 AL160413.1-201ENST00000622780 310 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 U2.21-201ENST00000637295 81 ntBASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PTCHD3Q3KNS1 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 SNORD14B-201ENST00000364533 90 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 Y_RNA.315-201ENST00000365117 102 ntBASIC3.39□□□□□ -1.87
PTCHD3Q3KNS1 XGY1-201ENST00000381172 446 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms