Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 MTND4P35-201ENST00000604257 1375 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RNU6-884P-201ENST00000363889 107 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RNU4-12P-201ENST00000365233 139 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RNU6-116P-201ENST00000384042 109 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AL354719.1-201ENST00000406535 843 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RNU6-1025P-201ENST00000410629 104 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RNU6-193P-201ENST00000410977 107 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 USP9YP6-201ENST00000413550 854 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 SKA2P1-201ENST00000425592 390 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 TRIAP1P1-201ENST00000427062 225 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC022018.1-201ENST00000430685 241 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC000111.3-201ENST00000433478 193 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RPL37P4-201ENST00000448908 268 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 SNRPFP3-201ENST00000457792 225 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 RNU7-180P-201ENST00000459240 63 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC114781.4-201ENST00000513707 639 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 Y_RNA.704-201ENST00000516851 102 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 MIR2276-201ENST00000516886 89 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 MTND4LP26-201ENST00000518144 282 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC005476.1-201ENST00000554427 397 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC015917.1-201ENST00000579654 510 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 MIR5692A1-201ENST00000580523 69 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC026585.1-201ENST00000619582 524 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 SNORD39.4-201ENST00000620099 78 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AL356321.1-201ENST00000621360 228 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 YWHAEP7-203ENST00000622054 312 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AP003122.6-201ENST00000623831 495 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 MIR3688-2-201ENST00000636963 87 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 AC009487.2-201ENST00000420969 6821 ntBASIC3.05□□□□□ -1.92
COL28A1Q2UY09 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC000403.1-201ENST00000613696 3585 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MTND4P14-201ENST00000435799 1354 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 NACAP2-201ENST00000318548 624 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MIR412-201ENST00000362142 91 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 SNORA70B-201ENST00000384210 135 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 Y_RNA.573-201ENST00000384763 105 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 SNORA40C-201ENST00000391285 128 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 RN7SKP123-201ENST00000410732 291 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 SNRPEP10-201ENST00000420249 274 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MTCO1P20-201ENST00000425366 358 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC244505.4-201ENST00000434905 287 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MTATP6P13-201ENST00000438531 667 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 SSXP5-201ENST00000443473 287 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 NDUFB1P2-201ENST00000449477 176 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 RPL26P9-201ENST00000457466 433 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AL121769.1-201ENST00000469473 401 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC022493.1-201ENST00000492984 337 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC139453.3-201ENST00000493276 369 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC008716.1-201ENST00000511084 513 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 RNA5SP367-201ENST00000516557 118 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 SNORD60.2-201ENST00000516883 86 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 NACAP3-201ENST00000552100 481 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 MTCO3P23-201ENST00000561363 289 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 AL138976.2-201ENST00000563989 694 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.04□□□□□ -1.92
COL28A1Q2UY09 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL28A1Q2UY09 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 RNY3P3-201ENST00000363816 102 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 SNORA51.4-201ENST00000364993 124 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 SNORA75B-201ENST00000384053 137 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 RPL21P3-201ENST00000395517 478 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AL365496.1-201ENST00000426885 215 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AL669831.1-202ENST00000428504 417 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 GTF2IP13-201ENST00000438487 386 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 CALM1P1-201ENST00000442082 433 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AL360271.2-201ENST00000447710 161 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC108938.1-201ENST00000451204 136 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 snoU13.26-201ENST00000459452 105 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms